Variant report

Variant	rs2524092
Chromosome Location	chr6:31240216-31240217
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31238890-31240219	GM10847	blood:	n/a	n/a
2	POLR2A	chr6:31234521-31240439	GM12878	blood:	n/a	n/a
3	MAZ	chr6:31239571-31240425	GM12878	blood:	n/a	n/a
4	POLR2A	chr6:31239159-31240262	Hela-S3	cervix:	n/a	n/a
5	EBF1	chr6:31239649-31240548	GM12878	blood:	n/a	chr6:31239853-31239864
6	PAX5	chr6:31238704-31240248	GM12878	blood:	n/a	chr6:31240011-31240020
7	RELA	chr6:31239653-31240281	GM15510	blood:	n/a	n/a
8	POLR2A	chr6:31240177-31240219	K562	blood:	n/a	n/a
9	POLR2A	chr6:31239419-31240229	HCT-116	colon:	n/a	n/a
10	POLR2A	chr6:31239586-31240232	HCT-116	colon:	n/a	n/a
11	POLR2A	chr6:31233706-31240407	GM12891	blood:	n/a	n/a
12	CREB1	chr6:31239737-31240264	K562	blood:	n/a	n/a
13	HEY1	chr6:31239541-31240244	HepG2	liver:	n/a	n/a
14	SPI1	chr6:31239754-31240216	GM12878	blood:	n/a	n/a
15	CREB1	chr6:31239648-31240296	GM12878	blood:	n/a	n/a
16	MAZ	chr6:31239339-31240448	IMR90	lung:	n/a	n/a
17	SPI1	chr6:31239722-31240264	GM12891	blood:	n/a	chr6:31240225-31240238
18	POLR2A	chr6:31233597-31240425	GM12891	blood:	n/a	n/a
19	POU2F2	chr6:31238714-31240261	GM12891	blood:	n/a	n/a
20	RELA	chr6:31239752-31240249	GM19099	blood:	n/a	n/a
21	WRNIP1	chr6:31239421-31240424	GM12878	blood:	n/a	n/a
22	POLR2A	chr6:31238364-31240493	GM12891	blood:	n/a	n/a
23	POLR2A	chr6:31238363-31240468	GM18526	blood:	n/a	n/a
24	POLR2A	chr6:31233096-31241392	GM12892	blood:	n/a	n/a
25	POLR2A	chr6:31239211-31240222	MCF10A-Er-Src	breast:	n/a	n/a
26	TAF1	chr6:31239635-31240216	GM12892	blood:	n/a	n/a
27	POLR2A	chr6:31239638-31240290	MCF-7	breast:	n/a	n/a
28	ZNF263	chr6:31239686-31240227	HEK293-T-REx	kidney:	n/a	n/a
29	RCOR1	chr6:31239792-31240252	GM12878	blood:	n/a	n/a
30	POLR2A	chr6:31239454-31240412	U87	brain:	n/a	n/a
31	MTA3	chr6:31239075-31240682	GM12878	blood:	n/a	n/a
32	RFX5	chr6:31239695-31240252	K562	blood:	n/a	chr6:31239918-31239927
33	POLR2A	chr6:31237159-31240295	GM12878	blood:	n/a	n/a
34	RFX5	chr6:31238270-31242325	SK-N-SH	brain:	n/a	chr6:31239918-31239927
35	POLR2A	chr6:31238511-31240336	GM12878	blood:	n/a	n/a
36	IRF4	chr6:31239672-31240301	GM12878	blood:	n/a	n/a
37	RUNX3	chr6:31239600-31240393	GM12878	blood:	n/a	n/a
38	MXI1	chr6:31239226-31240392	IMR90	lung:	n/a	n/a
39	RFX5	chr6:31239419-31240855	HepG2	liver:	n/a	chr6:31239918-31239927
40	FOXM1	chr6:31239087-31240331	GM12878	blood:	n/a	n/a
41	RELA	chr6:31239710-31240242	GM19193	blood:	n/a	n/a
42	POLR2A	chr6:31233216-31241351	GM12892	blood:	n/a	n/a
43	POLR2A	chr6:31233203-31241373	GM12892	blood:	n/a	n/a
44	POLR2A	chr6:31232959-31241452	GM12892	blood:	n/a	n/a
45	POU2F2	chr6:31237191-31240338	GM12878	blood:	n/a	n/a
46	RELA	chr6:31239199-31240250	GM12891	blood:	n/a	n/a
47	POLR2A	chr6:31238407-31240486	GM12878	blood:	n/a	n/a
48	POLR2A	chr6:31232877-31241483	GM12878	blood:	n/a	n/a
49	PML	chr6:31239061-31240637	GM12878	blood:	n/a	chr6:31239924-31239932
50	CHD1	chr6:31239206-31240387	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:31238404..31240559-chr6:31321762..31324439,3	MCF-7	breast:
2	chr6:31238976..31240351-chr6:31324393..31325523,6	HCT-116	colon:
3	chr6:29910138..29911769-chr6:31239456..31240978,2	MCF-7	breast:

Variant related genes	Relation type
USP8P1	TF binding region
HLA-C	TF binding region
ENSG00000271581	Chromatin interaction
ENSG00000227766	Chromatin interaction
ENSG00000206503	Chromatin interaction
ENSG00000234745	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1050344	0.83[EUR][1000 genomes]
rs1050716	0.81[EUR][1000 genomes]
rs1131096	0.84[EUR][1000 genomes]
rs2308525	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2524054	0.87[ASN][1000 genomes]
rs2524060	0.84[ASN][1000 genomes]
rs2524074	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2524080	0.90[ASN][1000 genomes]
rs2524091	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2524093	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2524142	0.86[ASN][1000 genomes]
rs2524143	0.85[ASN][1000 genomes]
rs2844612	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2844619	0.88[ASN][1000 genomes]
rs28498059	0.89[ASN][1000 genomes]
rs2853928	0.87[ASN][1000 genomes]
rs3130694	0.88[ASN][1000 genomes]
rs3132488	0.88[ASN][1000 genomes]
rs3132490	0.81[ASN][1000 genomes]
rs3132491	0.89[ASN][1000 genomes]
rs3134744	0.88[ASN][1000 genomes]
rs3930575	0.88[ASN][1000 genomes]
rs6457374	0.86[ASN][1000 genomes]
rs7381988	0.90[ASN][1000 genomes]
rs7767581	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9264636	0.83[EUR][1000 genomes]
rs9264637	0.83[EUR][1000 genomes]
rs9264638	0.80[EUR][1000 genomes]
rs9264640	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9264642	0.83[ASN][1000 genomes]
rs9264643	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9264645	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9264647	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9264652	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9264663	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9264664	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9264670	0.88[ASN][1000 genomes]
rs9264679	0.89[ASN][1000 genomes]
rs9264731	0.88[ASN][1000 genomes]
rs9264732	0.88[ASN][1000 genomes]
rs9264734	0.88[ASN][1000 genomes]
rs9264737	0.88[ASN][1000 genomes]
rs9264738	0.88[ASN][1000 genomes]
rs9264739	0.88[ASN][1000 genomes]
rs9264742	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
7	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
8	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
9	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
10	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
11	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
12	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
13	nsv1034391	chr6:31131121-31279595	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
14	nsv1025909	chr6:31131121-31354706	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
15	nsv538175	chr6:31131121-31354706	Active TSS Bivalent Enhancer Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
16	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
17	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
18	esv32635	chr6:31141504-31250618	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
19	nsv1024887	chr6:31162849-31354706	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
20	nsv538177	chr6:31162849-31354706	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
21	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
22	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
23	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
24	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
25	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
26	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
27	nsv432867	chr6:31196671-31343862	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
28	nsv966677	chr6:31205370-31256620	Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
29	esv5999	chr6:31206410-31285897	Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
30	esv3373199	chr6:31206451-31287335	Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
31	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
32	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
33	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
34	esv6375	chr6:31210228-31287149	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
35	esv3475032	chr6:31210396-31321602	Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
36	esv3475033	chr6:31210396-31321602	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
37	esv3494518	chr6:31213606-31289031	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
38	esv3494520	chr6:31213606-31289031	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
39	esv2422229	chr6:31215949-31322934	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
40	esv3328153	chr6:31230846-31327330	Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
41	esv2503823	chr6:31233039-31319362	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
42	esv35158	chr6:31233510-31318221	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
43	nsv525255	chr6:31234381-31241032	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
44	esv3475034	chr6:31234427-31327274	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
45	esv3475035	chr6:31234427-31327274	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
46	esv5788	chr6:31234471-31320006	ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
47	esv3486666	chr6:31235773-31240771	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
48	esv3486667	chr6:31235773-31240771	Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
49	esv6661	chr6:31236449-31321770	Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
50	esv12719	chr6:31237024-31240317	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2524092	CCHCR1	Cis_1M	lymphoblastoid	RTeQTL
rs2524092	HLA-C///LOC732037	N/A	lymphoblastoid	RTeQTL
rs2524092	HLA-C	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31236600-31240400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:31238200-31240400	Active TSS	Brain Anterior Caudate	brain
3	chr6:31238400-31240400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:31238400-31240400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:31238400-31240400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:31238400-31241000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:31238400-31241000	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:31238600-31240400	Active TSS	Small Intestine	intestine
9	chr6:31238600-31240400	Active TSS	HSMM	muscle
10	chr6:31238600-31240400	Active TSS	HSMMtube	muscle
11	chr6:31238600-31240600	Active TSS	H9 Cell Line	embryonic stem cell
12	chr6:31238600-31240600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:31238600-31240600	Active TSS	Right Ventricle	heart
14	chr6:31238600-31240800	Active TSS	Psoas Muscle	Psoas
15	chr6:31238600-31241000	Active TSS	Right Atrium	heart
16	chr6:31238800-31240400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:31238800-31240400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:31238800-31240400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:31238800-31240400	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:31238800-31240400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:31238800-31240400	Active TSS	Colon Smooth Muscle	Colon
22	chr6:31238800-31240400	Active TSS	Fetal Kidney	kidney
23	chr6:31238800-31240400	Active TSS	Ovary	ovary
24	chr6:31238800-31240400	Active TSS	Placenta Amnion	Placenta Amnion
25	chr6:31238800-31240400	Active TSS	A549	lung
26	chr6:31238800-31240800	Active TSS	Aorta	Aorta
27	chr6:31238800-31240800	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr6:31239000-31240400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:31239000-31240400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:31239000-31240400	Active TSS	Brain Substantia Nigra	brain
31	chr6:31239000-31240400	Active TSS	Esophagus	oesophagus
32	chr6:31239000-31240400	Active TSS	Gastric	stomach
33	chr6:31239000-31240400	Active TSS	Lung	lung
34	chr6:31239000-31240400	Active TSS	Spleen	Spleen
35	chr6:31239000-31240400	Active TSS	Monocytes-CD14+_RO01746	blood
36	chr6:31239000-31240400	Active TSS	NH-A	brain
37	chr6:31239000-31240400	Active TSS	NHLF	lung
38	chr6:31239000-31240600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:31239000-31240600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:31239000-31240600	Active TSS	Fetal Intestine Small	intestine
41	chr6:31239000-31240600	Active TSS	Fetal Lung	lung
42	chr6:31239000-31240600	Active TSS	Osteobl	bone
43	chr6:31239000-31240800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
44	chr6:31239000-31240800	Active TSS	Primary T cells fromperipheralblood	blood
45	chr6:31239000-31240800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:31239000-31240800	Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr6:31239000-31240800	Active TSS	Adipose Nuclei	Adipose
48	chr6:31239000-31240800	Active TSS	Left Ventricle	heart
49	chr6:31239000-31240800	Active TSS	Rectal Mucosa Donor 31	rectum
50	chr6:31239000-31240800	Active TSS	Sigmoid Colon	Sigmoid Colon

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