Variant report

Variant	rs2525511
Chromosome Location	chr14:68968551-68968552
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68957700..68966900-chr14:68968037..68976020,15	MCF-7	breast:
2	chr14:68968310..68970702-chr14:68984207..68986493,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11158748	0.92[ASN][1000 genomes]
rs2331706	0.89[ASN][1000 genomes]
rs2525510	0.99[ASN][1000 genomes]
rs2842315	0.89[ASN][1000 genomes]
rs3784130	0.89[ASN][1000 genomes]
rs7142882	0.89[ASN][1000 genomes]
rs737387	0.99[ASN][1000 genomes]
rs739872	0.99[ASN][1000 genomes]
rs765899	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68951000-68969400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68956800-68971800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:68960200-68969600	Weak transcription	Fetal Intestine Large	intestine
4	chr14:68960400-68969600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:68960400-68971000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:68960400-68971400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:68960400-68971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:68960400-68971800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr14:68962000-68972000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:68962200-68969400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr14:68962200-68971000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:68962800-68968600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:68962800-68972600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:68963200-68972600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:68965000-68971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:68965400-68974400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:68965400-68976800	Enhancers	Fetal Thymus	thymus
18	chr14:68965800-68973200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:68966000-68970400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr14:68966400-68968600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:68966400-68970000	Enhancers	Spleen	Spleen
22	chr14:68967000-68969000	Enhancers	HUVEC	blood vessel
23	chr14:68967400-68968800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr14:68967400-68968800	Enhancers	Right Ventricle	heart
25	chr14:68967400-68973200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr14:68967400-68973600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr14:68967400-68981600	Enhancers	Fetal Muscle Leg	muscle
28	chr14:68967400-68982400	Enhancers	Primary B cells from peripheral blood	blood
29	chr14:68967600-68968800	Enhancers	Adipose Nuclei	Adipose
30	chr14:68967600-68968800	Enhancers	Right Atrium	heart
31	chr14:68967600-68968800	Enhancers	Thymus	Thymus
32	chr14:68967600-68969000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
33	chr14:68967600-68969000	Enhancers	Pancreas	Pancrea
34	chr14:68967600-68970000	Enhancers	Lung	lung
35	chr14:68967600-68970200	Enhancers	Fetal Muscle Trunk	muscle
36	chr14:68967600-68972800	Enhancers	Primary T cells from cord blood	blood
37	chr14:68967600-68973000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr14:68967600-68973200	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr14:68967600-68973800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr14:68967600-68974200	Enhancers	Placenta	Placenta
41	chr14:68967800-68968600	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr14:68967800-68968600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:68967800-68968800	Enhancers	Ovary	ovary
44	chr14:68967800-68969000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr14:68967800-68969600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr14:68967800-68969800	Enhancers	Fetal Heart	heart
47	chr14:68967800-68970000	Enhancers	Esophagus	oesophagus
48	chr14:68967800-68974400	Enhancers	Fetal Stomach	stomach
49	chr14:68968000-68968800	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr14:68968000-68968800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links