Variant report

Variant	rs2842315
Chromosome Location	chr14:68959229-68959230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68958868..68960995-chr14:69252275..69254808,2	MCF-7	breast:
2	chr14:68958814..68961806-chr14:68963005..68965065,2	K562	blood:
3	chr14:68953391..68956250-chr14:68958714..68961472,3	MCF-7	breast:
4	chr14:68957700..68966900-chr14:68968037..68976020,15	MCF-7	breast:
5	chr14:68957189..68962665-chr14:69258217..69261056,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11158748	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2331706	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525510	0.89[ASN][1000 genomes]
rs2525511	0.89[ASN][1000 genomes]
rs3784130	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142882	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737387	0.89[ASN][1000 genomes]
rs739872	0.89[ASN][1000 genomes]
rs765899	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68944400-68968200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68945400-68959600	Weak transcription	Primary B cells from cord blood	blood
3	chr14:68950600-68968200	Weak transcription	Gastric	stomach
4	chr14:68951000-68959400	Weak transcription	Fetal Kidney	kidney
5	chr14:68951000-68969400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:68951800-68960400	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:68952000-68961800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:68952000-68967600	Weak transcription	Thymus	Thymus
9	chr14:68952400-68960600	Weak transcription	Primary T cells from cord blood	blood
10	chr14:68953200-68960400	Weak transcription	Fetal Lung	lung
11	chr14:68953400-68960200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr14:68954000-68961600	Weak transcription	Lung	lung
13	chr14:68955000-68961000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr14:68955200-68961000	Weak transcription	Fetal Thymus	thymus
15	chr14:68955200-68961200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:68955200-68961800	Weak transcription	HSMM	muscle
17	chr14:68955200-68967600	Weak transcription	Placenta	Placenta
18	chr14:68955400-68959400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr14:68955400-68961200	Weak transcription	NHEK	skin
20	chr14:68955400-68961400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:68955400-68967600	Weak transcription	Pancreas	Pancrea
22	chr14:68956000-68959400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr14:68956200-68960800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:68956800-68971800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:68957400-68960200	Enhancers	Fetal Intestine Large	intestine
26	chr14:68957400-68960200	Enhancers	Fetal Intestine Small	intestine
27	chr14:68957600-68965600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr14:68957800-68959800	Weak transcription	Fetal Muscle Leg	muscle
29	chr14:68958000-68959800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:68958000-68961400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr14:68958000-68961800	Weak transcription	Spleen	Spleen
32	chr14:68958200-68959800	Enhancers	GM12878-XiMat	blood
33	chr14:68958200-68962000	Enhancers	Fetal Stomach	stomach
34	chr14:68958400-68960000	Enhancers	Primary B cells from peripheral blood	blood
35	chr14:68958600-68960000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr14:68958600-68960000	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr14:68958600-68967800	Weak transcription	Ovary	ovary
38	chr14:68958800-68960400	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr14:68959000-68960400	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr14:68959200-68959800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr14:68959200-68960400	Enhancers	H1 Cell Line	embryonic stem cell
42	chr14:68959200-68960400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:68959200-68960400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:68959200-68960400	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr14:68959200-68960600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr14:68959200-68960600	Enhancers	H9 Cell Line	embryonic stem cell

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