Variant report

Variant	rs2526433
Chromosome Location	chr4:110100863-110100864
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2526437	1.00[CEU][hapmap]
rs2704099	1.00[AMR][1000 genomes]
rs2704103	1.00[CEU][hapmap]
rs6845200	1.00[EUR][1000 genomes]
rs7695097	1.00[CEU][hapmap]
rs961695	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110085000-110105600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:110093400-110105600	Weak transcription	Hela-S3	cervix
3	chr4:110099000-110107000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:110099200-110103400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:110099200-110104000	Weak transcription	Fetal Lung	lung
6	chr4:110099200-110104200	Weak transcription	Fetal Brain Male	brain
7	chr4:110099200-110107000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:110100200-110101400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:110100200-110101400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:110100200-110101600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:110100200-110101800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr4:110100400-110101400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:110100400-110101400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:110100600-110105200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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