Variant report

Variant	rs2704099
Chromosome Location	chr4:110097555-110097556
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11931270	1.00[ASN][1000 genomes]
rs17039964	1.00[ASN][1000 genomes]
rs17040028	1.00[ASN][1000 genomes]
rs17040036	1.00[ASN][1000 genomes]
rs17040048	1.00[ASN][1000 genomes]
rs2526433	1.00[AMR][1000 genomes]
rs6820892	0.89[ASN][1000 genomes]
rs6823174	1.00[ASN][1000 genomes]
rs6827384	1.00[ASN][1000 genomes]
rs6853482	1.00[ASN][1000 genomes]
rs982194	1.00[ASN][1000 genomes]
rs982195	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110085000-110105600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:110093400-110105600	Weak transcription	Hela-S3	cervix
3	chr4:110093600-110098600	Weak transcription	Fetal Stomach	stomach
4	chr4:110094400-110097800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:110097000-110098800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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