Variant report

Variant	rs2526952
Chromosome Location	chr7:86258737-86258738
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10241183	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs200839	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2204638	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2299212	0.81[ASN][1000 genomes]
rs274614	0.81[ASN][1000 genomes]
rs274616	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs274617	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs274618	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs274619	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs274620	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs274621	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs274622	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs274623	0.87[ASN][1000 genomes]
rs274624	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs274628	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs274629	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs274630	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs274631	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs274633	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs274634	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs274636	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs274637	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62488405	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs701337	0.81[ASN][1000 genomes]
rs701338	0.81[ASN][1000 genomes]
rs7794681	0.81[ASN][1000 genomes]
rs802421	0.81[ASN][1000 genomes]
rs802423	0.81[ASN][1000 genomes]
rs802427	0.81[ASN][1000 genomes]
rs802430	0.81[ASN][1000 genomes]
rs802431	0.81[ASN][1000 genomes]
rs802433	0.81[ASN][1000 genomes]
rs802443	0.81[ASN][1000 genomes]
rs802445	0.81[ASN][1000 genomes]
rs802446	0.81[ASN][1000 genomes]
rs802447	0.81[ASN][1000 genomes]
rs802449	0.81[ASN][1000 genomes]
rs802450	0.81[ASN][1000 genomes]
rs802459	0.81[ASN][1000 genomes]
rs802465	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1017470	chr7:86221308-86263909	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv526622	chr7:86222259-86260816	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86258600-86259000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr7:86258600-86259000	Enhancers	HUES64 Cell Line	embryonic stem cell

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