Variant report
| Variant | rs62488405 |
|---|---|
| Chromosome Location | chr7:86234000-86234001 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10241183 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs200839 | 0.86[EUR][1000 genomes] |
| rs2204638 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2526952 | 0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs274616 | 0.86[EUR][1000 genomes] |
| rs274617 | 0.86[EUR][1000 genomes] |
| rs274618 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs274619 | 0.86[EUR][1000 genomes] |
| rs274620 | 0.86[EUR][1000 genomes] |
| rs274621 | 0.86[EUR][1000 genomes] |
| rs274622 | 0.88[EUR][1000 genomes] |
| rs274624 | 0.82[AMR][1000 genomes] |
| rs274628 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs274629 | 0.86[EUR][1000 genomes] |
| rs274630 | 0.86[EUR][1000 genomes] |
| rs274631 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs274633 | 0.86[EUR][1000 genomes] |
| rs274634 | 0.86[EUR][1000 genomes] |
| rs274636 | 0.86[EUR][1000 genomes] |
| rs274637 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025032 | chr7:86032479-86642973 | Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017470 | chr7:86221308-86263909 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv526622 | chr7:86222259-86260816 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv2764034 | chr7:86227204-86245054 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv3477373 | chr7:86231201-86245406 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 6 | esv3477375 | chr7:86231318-86245286 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 7 | nsv819490 | chr7:86231368-86245850 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:86231000-86235000 | Weak transcription | Brain Angular Gyrus | brain |
