Variant report

Variant	rs2532563
Chromosome Location	chr12:4169052-4169053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1811260	0.81[AMR][1000 genomes]
rs2532536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2540149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2724205	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2724207	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2724210	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2724239	0.89[AMR][1000 genomes]
rs7314725	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7315487	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv832316	chr12:3981184-4180381	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4160400-4169200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:4169000-4169200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr12:4169000-4169200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr12:4169000-4169800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:4169000-4170000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:4169000-4170200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr12:4169000-4170200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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