Variant report

Variant	rs2532668
Chromosome Location	chr10:118084032-118084033
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2532672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532673	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532676	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532683	1.00[AMR][1000 genomes]
rs2532685	1.00[AMR][1000 genomes]
rs2532686	1.00[AMR][1000 genomes]
rs2568924	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2577350	1.00[AMR][1000 genomes]
rs2577352	1.00[AMR][1000 genomes]
rs2577366	1.00[AMR][1000 genomes]
rs2577367	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118083600-118084600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr10:118083600-118084600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:118083800-118084400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:118083800-118084400	Enhancers	Pancreas	Pancrea
5	chr10:118083800-118085200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:118083800-118085200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:118084000-118084400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr10:118084000-118084400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr10:118084000-118084400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:118084000-118084400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:118084000-118084600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr10:118084000-118084600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr10:118084000-118085600	Active TSS	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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