Variant report

Variant	rs2577366
Chromosome Location	chr10:118038809-118038810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2532668	1.00[AMR][1000 genomes]
rs2532672	1.00[AMR][1000 genomes]
rs2532673	1.00[AMR][1000 genomes]
rs2532676	1.00[AMR][1000 genomes]
rs2532683	1.00[AMR][1000 genomes]
rs2532685	1.00[AMR][1000 genomes]
rs2532686	1.00[AMR][1000 genomes]
rs2568924	1.00[AMR][1000 genomes]
rs2577350	1.00[AMR][1000 genomes]
rs2577352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2577367	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118034400-118040800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:118034600-118043000	Weak transcription	Fetal Stomach	stomach
3	chr10:118038000-118039000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:118038000-118039000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:118038000-118039600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:118038200-118039000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:118038200-118039000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:118038200-118039000	Bivalent Enhancer	Fetal Brain Male	brain
9	chr10:118038200-118039000	Enhancers	NH-A	brain
10	chr10:118038400-118039000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:118038600-118039000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:118038600-118039000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:118038600-118039000	Enhancers	NHDF-Ad	bronchial
14	chr10:118038600-118041200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:118038800-118039000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:118038800-118039600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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