Variant report

Variant	rs2532790
Chromosome Location	chr10:119101401-119101402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2429506	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490630	1.00[AMR][1000 genomes]
rs2532837	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2794417	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2794420	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2803798	1.00[AMR][1000 genomes]
rs2803800	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2803806	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2803812	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2803813	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs363266	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs363378	1.00[AMR][1000 genomes]
rs74159202	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1007152	chr10:119093939-119103178	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119049800-119102400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:119050000-119101600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:119063800-119113200	Weak transcription	Fetal Thymus	thymus
4	chr10:119066800-119111600	Weak transcription	Colonic Mucosa	Colon
5	chr10:119069400-119104400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:119071600-119106000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr10:119072000-119111200	Weak transcription	Aorta	Aorta
8	chr10:119076400-119104800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:119078200-119104400	Weak transcription	HSMM	muscle
10	chr10:119079000-119101800	Weak transcription	NHEK	skin
11	chr10:119082400-119118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:119082600-119102000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:119083400-119104600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:119085600-119102000	Weak transcription	Pancreas	Pancrea
15	chr10:119086000-119102000	Weak transcription	Gastric	stomach
16	chr10:119089800-119102000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:119094000-119102000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:119094000-119113200	Weak transcription	Thymus	Thymus
19	chr10:119094200-119101600	Weak transcription	Adipose Nuclei	Adipose
20	chr10:119094200-119102400	Weak transcription	Brain Angular Gyrus	brain
21	chr10:119094200-119108600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:119094400-119105600	Weak transcription	Fetal Stomach	stomach
23	chr10:119094800-119101800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr10:119094800-119102400	Weak transcription	Fetal Lung	lung
25	chr10:119095000-119102000	Weak transcription	Psoas Muscle	Psoas
26	chr10:119095000-119102400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:119095000-119113200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:119095200-119102000	Weak transcription	Spleen	Spleen
29	chr10:119095200-119105000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:119095600-119112200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:119095600-119113400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:119096000-119102000	Weak transcription	Lung	lung
33	chr10:119096200-119102000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr10:119096200-119102400	Weak transcription	Brain Germinal Matrix	brain
35	chr10:119096800-119104200	Weak transcription	Esophagus	oesophagus
36	chr10:119096800-119112000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr10:119097000-119112000	Weak transcription	Brain Anterior Caudate	brain
38	chr10:119097000-119114600	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:119097400-119102000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:119098200-119102000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:119098400-119104600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr10:119098600-119105200	Weak transcription	Fetal Kidney	kidney
43	chr10:119099000-119101800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:119099000-119102000	Weak transcription	Left Ventricle	heart
45	chr10:119099000-119107800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:119099200-119102600	Enhancers	H1 Cell Line	embryonic stem cell
47	chr10:119099200-119103200	Enhancers	Small Intestine	intestine
48	chr10:119099400-119102000	Weak transcription	Ovary	ovary
49	chr10:119099400-119102000	Weak transcription	Right Atrium	heart
50	chr10:119099400-119104400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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