Variant report

Variant	rs2533058
Chromosome Location	chr14:72318430-72318431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11158915	0.94[EUR][1000 genomes]
rs12896381	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1892560	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2533059	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72732389	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732390	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs72732392	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs72732400	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72732401	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72734003	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72734014	0.98[EUR][1000 genomes]
rs8018260	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv565044	chr14:72317961-72336142	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72316000-72319000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr14:72316400-72319200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:72316600-72319000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:72316600-72319200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:72316600-72322600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:72316800-72318800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:72317000-72318600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:72317000-72318800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:72318200-72318600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:72318200-72319600	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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