Variant report

Variant	rs8018260
Chromosome Location	chr14:72314937-72314938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11158915	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12896381	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1892560	0.90[EUR][1000 genomes]
rs2022912	0.90[ASN][1000 genomes]
rs2332661	0.87[ASN][1000 genomes]
rs2533014	0.90[ASN][1000 genomes]
rs2533058	0.90[EUR][1000 genomes]
rs2533059	0.82[EUR][1000 genomes]
rs72732389	0.90[EUR][1000 genomes]
rs72732390	0.89[EUR][1000 genomes]
rs72732392	0.89[EUR][1000 genomes]
rs72732400	0.88[EUR][1000 genomes]
rs72732401	0.90[EUR][1000 genomes]
rs72734003	0.90[EUR][1000 genomes]
rs72734014	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72312800-72315600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr14:72314800-72315000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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