Variant report

Variant rs2535409
Chromosome Location chr12:671070-671071
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:649200-678800 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr12:652200-675600 Weak transcription H1 Cell Line embryonic stem cell
3 chr12:652400-678600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr12:652400-679000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr12:652600-672600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr12:656200-678600 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr12:656400-678400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr12:656600-672800 Weak transcription Pancreas Pancrea
9 chr12:656600-678400 Weak transcription Brain Anterior Caudate brain
10 chr12:656800-671200 Weak transcription Brain Cingulate Gyrus brain
11 chr12:656800-678800 Weak transcription Fetal Brain Female brain
12 chr12:657000-678200 Weak transcription Brain Angular Gyrus brain
13 chr12:657000-678600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr12:660000-673000 Weak transcription Rectal Smooth Muscle rectum
15 chr12:661800-678600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr12:662200-677000 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr12:662800-678800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr12:663000-678800 Weak transcription H9 Cell Line embryonic stem cell
19 chr12:663400-677400 Weak transcription Fetal Intestine Small intestine
20 chr12:663600-671200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr12:663600-676800 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr12:665400-671800 Strong transcription Sigmoid Colon Sigmoid Colon
23 chr12:665600-671400 Strong transcription Gastric stomach
24 chr12:665600-671800 Strong transcription Rectal Mucosa Donor 31 rectum
25 chr12:666800-675200 Weak transcription Fetal Heart heart
26 chr12:667400-672200 Enhancers Fetal Thymus thymus
27 chr12:667600-672000 Enhancers Primary T cells from cord blood blood
28 chr12:667800-672200 Enhancers Thymus Thymus
29 chr12:667800-678800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr12:668000-678800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr12:668600-671200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
32 chr12:668800-672400 Enhancers Primary Natural Killer cells fromperipheralblood blood
33 chr12:669000-671200 Enhancers Primary B cells from cord blood blood
34 chr12:669000-671200 Enhancers Primary T helper naive cells fromperipheralblood blood
35 chr12:669000-672000 Enhancers Primary T helper cells fromperipheralblood blood
36 chr12:669000-672000 Enhancers Primary T killer memory cells from peripheral blood blood
37 chr12:669000-672400 Enhancers Primary hematopoietic stem cells blood
38 chr12:669200-672200 Enhancers Primary T killer naive cells fromperipheralblood blood
39 chr12:669400-678600 Weak transcription Stomach Mucosa stomach
40 chr12:669600-672200 Enhancers Primary T cells fromperipheralblood blood
41 chr12:669600-672200 Weak transcription Esophagus oesophagus
42 chr12:669600-672800 Enhancers Fetal Muscle Leg muscle
43 chr12:669800-671200 Bivalent Enhancer Fetal Muscle Trunk muscle
44 chr12:669800-671400 Enhancers HSMMtube muscle
45 chr12:669800-671800 Enhancers Primary T helper naive cells from peripheral blood blood
46 chr12:669800-672000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr12:669800-672000 Weak transcription Brain Substantia Nigra brain
48 chr12:669800-672400 Enhancers Primary T helper cells PMA-I stimulated --
49 chr12:670000-671600 Enhancers HSMM muscle
50 chr12:670000-679200 Weak transcription Placenta Amnion Placenta Amnion

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