Variant report

Variant	rs2535490
Chromosome Location	chr19:44480317-44480318
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10451441	0.82[ASN][1000 genomes]
rs369958	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs385016	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs405676	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs419277	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs439676	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs462723	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59021410	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59689608	0.81[EUR][1000 genomes]
rs60213673	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6650752	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73567684	0.82[ASN][1000 genomes]
rs73567686	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv579854	chr19:44411543-44490024	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv912109	chr19:44459074-44493142	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44456400-44487800	ZNF genes & repeats	Liver	Liver
2	chr19:44462000-44485200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44474800-44487600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr19:44477800-44480600	ZNF genes & repeats	Brain Germinal Matrix	brain
5	chr19:44478600-44483000	ZNF genes & repeats	Fetal Brain Female	brain
6	chr19:44479200-44481800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
7	chr19:44480200-44482600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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