Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44486769..44491037-chr19:44505585..44508395,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159882	Chromatin interaction
ENSG00000266921	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10451441	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12327743	0.89[ASN][1000 genomes]
rs16976952	0.89[ASN][1000 genomes]
rs16976959	0.89[ASN][1000 genomes]
rs2535490	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs369958	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs419277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs439676	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs448921	0.89[ASN][1000 genomes]
rs462723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57574350	0.89[ASN][1000 genomes]
rs58379185	0.89[ASN][1000 genomes]
rs59689608	0.88[EUR][1000 genomes]
rs59955744	0.89[ASN][1000 genomes]
rs60213673	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61254478	0.89[ASN][1000 genomes]
rs6650752	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73567684	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73567686	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73567700	0.89[ASN][1000 genomes]
rs73569807	0.89[ASN][1000 genomes]
rs73569826	0.89[ASN][1000 genomes]
rs73569841	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv579854	chr19:44411543-44490024	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv912109	chr19:44459074-44493142	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44456400-44487800	ZNF genes & repeats	Liver	Liver
2	chr19:44474800-44487600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr19:44482200-44487800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr19:44482600-44487600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr19:44484400-44487800	Weak transcription	Brain Angular Gyrus	brain
6	chr19:44485200-44487600	Weak transcription	Pancreas	Pancrea
7	chr19:44485200-44488200	Weak transcription	Aorta	Aorta

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