Variant report

Variant	rs448921
Chromosome Location	chr19:44500761-44500762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10451441	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12327743	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16976952	1.00[ASN][1000 genomes]
rs16976959	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs369083	1.00[EUR][1000 genomes]
rs369958	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs379238	1.00[EUR][1000 genomes]
rs379612	1.00[EUR][1000 genomes]
rs385016	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs388471	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs388812	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs405676	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs419277	0.89[ASN][1000 genomes]
rs439676	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs452554	1.00[EUR][1000 genomes]
rs462723	0.89[ASN][1000 genomes]
rs57574350	1.00[ASN][1000 genomes]
rs58379185	1.00[ASN][1000 genomes]
rs59021410	0.89[ASN][1000 genomes]
rs59955744	1.00[ASN][1000 genomes]
rs60213673	0.89[ASN][1000 genomes]
rs61254478	1.00[ASN][1000 genomes]
rs6650752	0.89[ASN][1000 genomes]
rs73567684	0.89[ASN][1000 genomes]
rs73567686	0.89[ASN][1000 genomes]
rs73567700	1.00[ASN][1000 genomes]
rs73569807	1.00[ASN][1000 genomes]
rs73569826	1.00[ASN][1000 genomes]
rs73569841	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44489200-44506200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr19:44489200-44506200	Weak transcription	Hela-S3	cervix
3	chr19:44489600-44506200	Weak transcription	HepG2	liver
4	chr19:44491000-44501600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr19:44491000-44503400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:44491000-44503800	ZNF genes & repeats	Liver	Liver
7	chr19:44491400-44503400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr19:44491600-44501800	Strong transcription	Brain Hippocampus Middle	brain
9	chr19:44491800-44502200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:44492000-44502000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:44492200-44501400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr19:44492400-44501000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr19:44492400-44501400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:44492400-44501400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr19:44492400-44501800	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr19:44492400-44501800	Strong transcription	Brain Cingulate Gyrus	brain
17	chr19:44492400-44502000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr19:44492400-44502200	Strong transcription	Fetal Intestine Large	intestine
19	chr19:44492400-44502200	Strong transcription	HSMM	muscle
20	chr19:44492400-44502400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr19:44492400-44502400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr19:44492400-44502600	Strong transcription	Fetal Muscle Trunk	muscle
23	chr19:44492600-44501200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr19:44492600-44501600	Strong transcription	Thymus	Thymus
25	chr19:44492600-44502000	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr19:44492600-44502200	Strong transcription	Dnd41	blood
27	chr19:44492600-44502400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr19:44492600-44502400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr19:44492600-44502600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr19:44492800-44501400	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr19:44492800-44502000	Strong transcription	Brain Substantia Nigra	brain
32	chr19:44492800-44502000	Strong transcription	Fetal Thymus	thymus
33	chr19:44492800-44502000	Strong transcription	HSMMtube	muscle
34	chr19:44492800-44502200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr19:44493000-44501600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr19:44493200-44501800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr19:44493200-44501800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr19:44493200-44501800	Strong transcription	Placenta	Placenta
39	chr19:44493200-44501800	Strong transcription	Fetal Stomach	stomach
40	chr19:44493200-44502200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr19:44493400-44501200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr19:44493400-44501600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr19:44493400-44501800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr19:44493400-44502000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr19:44493400-44502400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr19:44493600-44502200	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr19:44494400-44502000	Strong transcription	Right Ventricle	heart
48	chr19:44495000-44501400	Strong transcription	Primary B cells from cord blood	blood
49	chr19:44495600-44501000	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr19:44496600-44503200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links