Variant report

Variant	rs73569826
Chromosome Location	chr19:44489542-44489543
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44486769..44491037-chr19:44505585..44508395,4	MCF-7	breast:
2	chr19:44487777..44490285-chr19:44555817..44558004,3	MCF-7	breast:
3	chr19:44487658..44489792-chr19:44505545..44508358,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266921	Chromatin interaction
ENSG00000159882	Chromatin interaction
ENSG00000178386	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10451441	0.89[ASN][1000 genomes]
rs11667318	1.00[EUR][1000 genomes]
rs11672570	1.00[EUR][1000 genomes]
rs12327743	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976952	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976959	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16978634	1.00[EUR][1000 genomes]
rs35026751	1.00[EUR][1000 genomes]
rs369958	0.89[ASN][1000 genomes]
rs378598	1.00[EUR][1000 genomes]
rs385016	0.89[ASN][1000 genomes]
rs405676	0.89[ASN][1000 genomes]
rs419277	0.89[ASN][1000 genomes]
rs424147	1.00[EUR][1000 genomes]
rs430107	1.00[EUR][1000 genomes]
rs439676	0.89[ASN][1000 genomes]
rs448921	1.00[ASN][1000 genomes]
rs4599026	1.00[EUR][1000 genomes]
rs462723	0.89[ASN][1000 genomes]
rs57574350	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58379185	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59021410	0.89[ASN][1000 genomes]
rs59955744	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60213673	0.89[ASN][1000 genomes]
rs61254478	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650752	0.89[ASN][1000 genomes]
rs7260087	1.00[EUR][1000 genomes]
rs73567684	0.89[ASN][1000 genomes]
rs73567686	0.89[ASN][1000 genomes]
rs73567700	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73569807	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73569841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8110949	1.00[EUR][1000 genomes]
rs8112679	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv579854	chr19:44411543-44490024	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv912109	chr19:44459074-44493142	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44487600-44489600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:44487600-44489600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:44487600-44489600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:44487600-44489600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:44487600-44489600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr19:44487600-44489600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr19:44487800-44489600	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr19:44487800-44489600	Active TSS	Fetal Intestine Small	intestine
9	chr19:44487800-44489600	Active TSS	HSMMtube	muscle
10	chr19:44488000-44489600	Active TSS	Ovary	ovary
11	chr19:44488000-44489600	Active TSS	A549	lung
12	chr19:44488200-44489600	Active TSS	H1 Cell Line	embryonic stem cell
13	chr19:44488200-44489600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr19:44488800-44489600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:44488800-44489600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr19:44488800-44489600	Flanking Active TSS	Dnd41	blood
17	chr19:44489000-44489600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr19:44489000-44489600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr19:44489000-44490000	Enhancers	Spleen	Spleen
20	chr19:44489000-44493600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr19:44489200-44489600	Enhancers	Primary B cells from peripheral blood	blood
22	chr19:44489200-44489600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr19:44489200-44489600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr19:44489200-44489600	Enhancers	Liver	Liver
25	chr19:44489200-44489600	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr19:44489200-44489600	Enhancers	Esophagus	oesophagus
27	chr19:44489200-44489600	Flanking Active TSS	Left Ventricle	heart
28	chr19:44489200-44490000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr19:44489200-44490000	Weak transcription	Fetal Kidney	kidney
30	chr19:44489200-44490000	Enhancers	Lung	lung
31	chr19:44489200-44490000	Enhancers	Right Ventricle	heart
32	chr19:44489200-44490200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr19:44489200-44490200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr19:44489200-44490200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr19:44489200-44490200	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr19:44489200-44490200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr19:44489200-44490200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr19:44489200-44490200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr19:44489200-44490200	Enhancers	Fetal Brain Male	brain
40	chr19:44489200-44490200	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr19:44489200-44490400	Enhancers	Fetal Heart	heart
42	chr19:44489200-44491600	Weak transcription	Aorta	Aorta
43	chr19:44489200-44492400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr19:44489200-44492400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr19:44489200-44492600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr19:44489200-44492600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr19:44489200-44492600	Weak transcription	Fetal Muscle Leg	muscle
48	chr19:44489200-44492600	Weak transcription	Psoas Muscle	Psoas
49	chr19:44489200-44493000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr19:44489200-44493200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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