Variant report

Variant	rs73569841
Chromosome Location	chr19:44492917-44492918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44488273..44490047-chr19:44492744..44495947,3	MCF-7	breast:
2	chr19:44490423..44495330-chr19:44505190..44508106,4	K562	blood:
3	chr19:44491075..44493860-chr19:44504109..44508403,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF155-1	chr19:44492611-44493120	NONHSAT066647

Variant related genes	Relation type
ENSG00000204920	Chromatin interaction
ENSG00000159882	Chromatin interaction
ENSG00000266921	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10451441	0.89[ASN][1000 genomes]
rs11667318	1.00[EUR][1000 genomes]
rs11672570	1.00[EUR][1000 genomes]
rs12327743	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16978634	1.00[EUR][1000 genomes]
rs35026751	1.00[EUR][1000 genomes]
rs369958	0.89[ASN][1000 genomes]
rs378598	1.00[EUR][1000 genomes]
rs385016	0.89[ASN][1000 genomes]
rs405676	0.89[ASN][1000 genomes]
rs419277	0.89[ASN][1000 genomes]
rs424147	1.00[EUR][1000 genomes]
rs430107	1.00[EUR][1000 genomes]
rs439676	0.89[ASN][1000 genomes]
rs448921	1.00[ASN][1000 genomes]
rs4599026	1.00[EUR][1000 genomes]
rs462723	0.89[ASN][1000 genomes]
rs57574350	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58379185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59021410	0.89[ASN][1000 genomes]
rs59955744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60213673	0.89[ASN][1000 genomes]
rs61254478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650752	0.89[ASN][1000 genomes]
rs7260087	1.00[EUR][1000 genomes]
rs73567684	0.89[ASN][1000 genomes]
rs73567686	0.89[ASN][1000 genomes]
rs73567700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73569807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73569826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8110949	1.00[EUR][1000 genomes]
rs8112679	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv912109	chr19:44459074-44493142	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44489000-44493600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:44489200-44493000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr19:44489200-44493200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr19:44489200-44493200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr19:44489200-44493400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:44489200-44493400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr19:44489200-44493400	Weak transcription	Brain Angular Gyrus	brain
8	chr19:44489200-44493400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr19:44489200-44493600	Weak transcription	Colonic Mucosa	Colon
10	chr19:44489200-44494600	Weak transcription	Gastric	stomach
11	chr19:44489200-44494600	Weak transcription	NHLF	lung
12	chr19:44489200-44496000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:44489200-44496000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr19:44489200-44496000	Weak transcription	Small Intestine	intestine
15	chr19:44489200-44496600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr19:44489200-44500400	Weak transcription	HUVEC	blood vessel
17	chr19:44489200-44506200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr19:44489200-44506200	Weak transcription	Hela-S3	cervix
19	chr19:44489400-44493000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr19:44489400-44493200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr19:44489400-44493200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr19:44489400-44493200	Weak transcription	Placenta	Placenta
23	chr19:44489400-44493200	Weak transcription	NHEK	skin
24	chr19:44489400-44493400	Weak transcription	Brain Anterior Caudate	brain
25	chr19:44489400-44493400	Weak transcription	NH-A	brain
26	chr19:44489400-44493600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr19:44489400-44493600	Weak transcription	Primary B cells from cord blood	blood
28	chr19:44489400-44493600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr19:44489400-44494000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr19:44489400-44495600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr19:44489400-44496600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr19:44489600-44493200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr19:44489600-44493400	Weak transcription	Osteobl	bone
34	chr19:44489600-44493600	Weak transcription	Esophagus	oesophagus
35	chr19:44489600-44494600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr19:44489600-44494800	Weak transcription	Fetal Intestine Small	intestine
37	chr19:44489600-44495600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr19:44489600-44496000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr19:44489600-44496200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr19:44489600-44506200	Weak transcription	HepG2	liver
41	chr19:44490000-44493600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr19:44490000-44494800	Weak transcription	Spleen	Spleen
43	chr19:44490200-44493000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr19:44490200-44493000	Weak transcription	Fetal Kidney	kidney
45	chr19:44490200-44493200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr19:44490200-44493400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr19:44490200-44493400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr19:44490200-44493400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr19:44490200-44493600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr19:44490400-44494600	Weak transcription	Fetal Heart	heart

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