Variant report

Variant	rs2536493
Chromosome Location	chr7:106690525-106690526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106689826..106691888-chr7:106808991..106811822,2	K562	blood:
2	chr7:106683978..106687135-chr7:106687835..106693768,6	MCF-7	breast:
3	chr7:106689062..106690686-chr7:106788089..106791077,2	K562	blood:
4	chr7:106687594..106692713-chr7:106807480..106811490,5	K562	blood:

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction
ENSG00000005249	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1476878	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1476879	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1544582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191919	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237649	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2244846	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2536492	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2536495	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6466155	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs722236	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs849299	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs849300	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs849303	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs997381	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106686800-106691000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:106686800-106691200	Weak transcription	NHLF	lung
3	chr7:106686800-106691400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:106686800-106707200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:106687200-106691200	Weak transcription	Fetal Stomach	stomach
6	chr7:106687800-106697400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:106688200-106697200	Weak transcription	Brain Germinal Matrix	brain
8	chr7:106689000-106690600	Enhancers	Adipose Nuclei	Adipose
9	chr7:106689000-106694400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:106689200-106690600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:106689200-106691400	Weak transcription	Fetal Brain Female	brain
12	chr7:106689200-106692600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:106689400-106690600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:106689400-106692200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:106689400-106692400	Weak transcription	Fetal Brain Male	brain
16	chr7:106689600-106691000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:106690000-106691000	Weak transcription	HUVEC	blood vessel
18	chr7:106690000-106691800	Genic enhancers	K562	blood
19	chr7:106690200-106690800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr7:106690400-106690600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:106690400-106692400	Enhancers	Duodenum Smooth Muscle	Duodenum

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