Variant report

Variant	rs849299
Chromosome Location	chr7:106666157-106666158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1476878	0.89[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1476879	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1544582	0.89[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.84[LWK][hapmap];0.87[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2191919	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2237649	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2237650	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2243984	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2244846	0.89[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.88[LWK][hapmap];0.87[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2536492	0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2536493	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2536495	0.96[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6466155	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs722236	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs849300	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs849303	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs997381	0.89[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.84[LWK][hapmap];0.87[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106664400-106666200	Enhancers	K562	blood
2	chr7:106664600-106667000	Enhancers	Fetal Brain Male	brain
3	chr7:106664800-106667000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:106664800-106670000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:106665400-106666200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:106665400-106666200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:106665400-106666800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:106665600-106666600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:106665800-106667000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:106665800-106667000	Enhancers	Adipose Nuclei	Adipose
11	chr7:106665800-106670200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr7:106666000-106666400	Enhancers	Primary hematopoietic stem cells	blood
13	chr7:106666000-106666600	Enhancers	A549	lung
14	chr7:106666000-106666800	Enhancers	Liver	Liver
15	chr7:106666000-106667000	Enhancers	Colon Smooth Muscle	Colon
16	chr7:106666000-106667600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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