Variant report

Variant	rs253881
Chromosome Location	chr3:134714355-134714356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1020434	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs16842460	0.86[YRI][hapmap]
rs194179	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs253882	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28211	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs36073	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36094	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs36095	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs36096	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs36097	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs36099	0.93[ASN][1000 genomes]
rs36100	0.91[ASN][1000 genomes]
rs36101	0.93[ASN][1000 genomes]
rs36102	0.89[CHB][hapmap];0.90[ASN][1000 genomes]
rs36105	0.93[ASN][1000 genomes]
rs36106	0.93[ASN][1000 genomes]
rs36108	0.93[ASN][1000 genomes]
rs36109	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs36110	0.89[CHB][hapmap]
rs36111	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs36112	0.88[CHB][hapmap];0.93[ASN][1000 genomes]
rs36113	0.93[ASN][1000 genomes]
rs36114	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs36115	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs36116	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs36117	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs36120	0.86[ASN][1000 genomes]
rs36121	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs39697	0.90[ASN][1000 genomes]
rs39698	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs39699	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs40435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs479815	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs574719	0.86[ASN][1000 genomes]
rs7644898	0.93[ASN][1000 genomes]
rs9855772	0.89[CHB][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877517	chr3:134709951-134805581	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134708000-134717800	Weak transcription	Psoas Muscle	Psoas
2	chr3:134712000-134716800	Weak transcription	Dnd41	blood
3	chr3:134712800-134716800	Weak transcription	GM12878-XiMat	blood
4	chr3:134713400-134718400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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