Variant report

Variant	rs39697
Chromosome Location	chr3:134711547-134711548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134711495..134714035-chr3:134895700..134897544,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1020434	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs194179	0.90[ASN][1000 genomes]
rs253881	0.90[ASN][1000 genomes]
rs253882	0.90[ASN][1000 genomes]
rs28211	0.92[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36073	0.87[ASN][1000 genomes]
rs36094	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36095	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36096	0.84[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36097	0.96[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36098	0.81[AMR][1000 genomes]
rs36099	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36100	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36101	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36102	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36105	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36106	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36108	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36109	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36110	0.96[CEU][hapmap];0.90[CHB][hapmap]
rs36111	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36112	0.95[CEU][hapmap];0.89[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36113	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36114	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36115	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36116	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36117	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36120	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36121	0.92[CEU][hapmap];0.90[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36123	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36125	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs39698	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs39699	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs40346	0.80[CHB][hapmap]
rs40435	0.87[ASN][1000 genomes]
rs479815	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs574719	0.96[CEU][hapmap];0.80[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7644898	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9855772	0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877517	chr3:134709951-134805581	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134708000-134717800	Weak transcription	Psoas Muscle	Psoas
2	chr3:134709600-134711800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:134709600-134712000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:134709600-134712800	Enhancers	GM12878-XiMat	blood
5	chr3:134709800-134711600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:134710000-134711600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:134710000-134711600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:134710000-134711600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:134710000-134711600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:134710000-134712000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:134710000-134712400	Enhancers	Brain Anterior Caudate	brain
12	chr3:134710600-134711600	Weak transcription	Fetal Brain Male	brain
13	chr3:134710800-134711600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:134711000-134712200	Enhancers	Fetal Brain Female	brain
15	chr3:134711000-134713400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:134711200-134712000	Enhancers	Brain Germinal Matrix	brain
17	chr3:134711200-134712000	Enhancers	Dnd41	blood
18	chr3:134711200-134712200	Enhancers	Adipose Nuclei	Adipose
19	chr3:134711400-134711600	Enhancers	Brain Cingulate Gyrus	brain
20	chr3:134711400-134712200	Enhancers	Brain Hippocampus Middle	brain

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