Variant report

Variant	rs2543051
Chromosome Location	chr8:39821037-39821038
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2543057	1.00[AMR][1000 genomes]
rs2729458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2729466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2729488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4604416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4737171	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39818200-39824400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:39819000-39821200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:39819800-39823600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr8:39820000-39822000	Flanking Active TSS	GM12878-XiMat	blood
5	chr8:39820000-39822600	Enhancers	Hela-S3	cervix
6	chr8:39820200-39822000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr8:39820400-39824400	Enhancers	HUVEC	blood vessel
8	chr8:39820600-39821200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:39820800-39827000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:39821000-39822000	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links