Variant report

Variant	rs2729458
Chromosome Location	chr8:39809833-39809834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2543051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2543057	1.00[AMR][1000 genomes]
rs2729466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2729488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4604416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4737171	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39805400-39810200	Enhancers	Primary hematopoietic stem cells	blood
2	chr8:39806000-39817000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:39806200-39810000	Active TSS	Liver	Liver
4	chr8:39808800-39810400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr8:39809000-39810200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:39809000-39810200	Flanking Active TSS	GM12878-XiMat	blood
7	chr8:39809000-39810400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr8:39809200-39810000	Flanking Active TSS	Primary B cells from peripheral blood	blood
9	chr8:39809200-39810000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:39809200-39810000	Active TSS	Adipose Nuclei	Adipose
11	chr8:39809200-39810200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr8:39809400-39810000	Active TSS	K562	blood
13	chr8:39809600-39810200	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr8:39809600-39811400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:39809800-39810200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:39809800-39810600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:39809800-39811400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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