Variant report

Variant	rs2544422
Chromosome Location	chr4:106723497-106723498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10516524	1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs11097896	0.87[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs1294671	1.00[YRI][hapmap]
rs1298219	0.82[AFR][1000 genomes]
rs17262443	1.00[YRI][hapmap]
rs17262457	1.00[YRI][hapmap]
rs2080788	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2112049	1.00[YRI][hapmap]
rs2112052	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2544396	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2553433	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2553444	0.85[LWK][hapmap]
rs2553451	0.87[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2553465	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2553466	1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs73839003	0.81[AFR][1000 genomes]
rs7676226	1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106692400-106729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
3	chr4:106697200-106725800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:106698000-106725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:106714200-106725800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:106717800-106729000	Weak transcription	Dnd41	blood
8	chr4:106719600-106728800	Weak transcription	Small Intestine	intestine
9	chr4:106723200-106723600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:106723400-106723800	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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