Variant report

Variant	rs2553433
Chromosome Location	chr4:106800117-106800118
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2080788	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2112052	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2544396	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2544422	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2553465	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830028	chr4:106769299-106801806	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106792200-106815800	Weak transcription	Aorta	Aorta
2	chr4:106799400-106800800	Enhancers	Fetal Heart	heart
3	chr4:106799800-106800400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:106799800-106800400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:106799800-106800600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:106799800-106800600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr4:106800000-106800200	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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