Variant report

Variant	rs2546943
Chromosome Location	chr5:167453656-167453657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10475863	0.84[EUR][1000 genomes]
rs2546945	0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167423400-167455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167443800-167466000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167447600-167483000	Weak transcription	Right Atrium	heart
4	chr5:167450200-167454600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:167450600-167457600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167450600-167466600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:167450800-167453800	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:167450800-167454200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:167450800-167474000	Weak transcription	Left Ventricle	heart
10	chr5:167451000-167454200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:167451200-167454000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:167451200-167455200	Strong transcription	NHEK	skin
13	chr5:167451800-167453800	Weak transcription	Brain Germinal Matrix	brain
14	chr5:167452000-167454200	Weak transcription	Fetal Lung	lung
15	chr5:167453600-167453800	Enhancers	Stomach Smooth Muscle	stomach
16	chr5:167453600-167454200	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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