Variant report

Variant	rs10475863
Chromosome Location	chr5:167421237-167421238
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10042104	1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052830	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10064267	0.90[EUR][1000 genomes]
rs10065915	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10076491	0.81[EUR][1000 genomes]
rs13359764	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs17069538	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069541	1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17069614	0.95[EUR][1000 genomes]
rs17069629	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011893	0.90[EUR][1000 genomes]
rs2019072	1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2546943	0.84[EUR][1000 genomes]
rs2546945	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs3909402	1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3909403	1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3909404	1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73803833	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167413800-167432000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167417200-167426400	Weak transcription	HSMM	muscle
3	chr5:167418400-167421600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:167418600-167426000	Weak transcription	Fetal Lung	lung
5	chr5:167419200-167423400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167419200-167428000	Weak transcription	Brain Anterior Caudate	brain
7	chr5:167419800-167424600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167420000-167423400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167420400-167422000	Genic enhancers	HMEC	breast
10	chr5:167420400-167422400	Genic enhancers	NHEK	skin
11	chr5:167420800-167421600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:167420800-167421600	Enhancers	Left Ventricle	heart
13	chr5:167420800-167421600	Enhancers	Right Atrium	heart
14	chr5:167420800-167423400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:167420800-167423600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:167420800-167425600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:167421000-167428000	Weak transcription	Right Ventricle	heart
18	chr5:167421200-167422200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:167421200-167422200	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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