Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167439208..167441791-chr5:167445435..167448219,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10042104	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052830	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10064267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10065915	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10076491	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10475863	1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953311	1.00[CEU][hapmap]
rs11954345	1.00[CEU][hapmap]
rs13359764	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17069337	1.00[CEU][hapmap]
rs17069538	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069541	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069614	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17069629	1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011893	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3909402	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3909403	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3909404	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs4869080	1.00[CEU][hapmap]
rs73803833	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3389704	chr5:167439756-167440292	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167423400-167440600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167423400-167455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167432400-167442400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167432600-167442000	Weak transcription	NHEK	skin
5	chr5:167432800-167440800	Weak transcription	Fetal Brain Male	brain
6	chr5:167434200-167442200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:167434800-167447600	Weak transcription	NH-A	brain
8	chr5:167437000-167441800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167437200-167444000	Weak transcription	Left Ventricle	heart
10	chr5:167438000-167448200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:167438400-167443600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:167438600-167440000	Enhancers	Right Ventricle	heart
13	chr5:167439400-167441600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:167439400-167442200	Weak transcription	HSMM	muscle
15	chr5:167439600-167441600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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