Variant report

Variant	rs17069629
Chromosome Location	chr5:167447748-167447749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167150041..167150634-chr5:167447492..167448418,3	MCF-7	breast:
2	chr5:167439208..167441791-chr5:167445435..167448219,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10042104	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052830	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064267	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10065915	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10076491	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10475863	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359764	1.00[JPT][hapmap]
rs17069538	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17069541	1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069614	1.00[CHD][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2011893	0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2019072	1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909402	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[EUR][1000 genomes]
rs3909403	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs3909404	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs73803833	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167423400-167455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167438000-167448200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:167443000-167449200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167443200-167452000	Weak transcription	HSMM	muscle
5	chr5:167443800-167466000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167444000-167449600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:167445800-167449200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167446200-167449800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:167446600-167453600	Weak transcription	Right Ventricle	heart
10	chr5:167447200-167447800	Enhancers	NHEK	skin
11	chr5:167447200-167449600	Enhancers	Fetal Brain Male	brain
12	chr5:167447200-167450800	Enhancers	Left Ventricle	heart
13	chr5:167447400-167447800	Enhancers	Brain Anterior Caudate	brain
14	chr5:167447400-167448000	Weak transcription	Ovary	ovary
15	chr5:167447400-167448400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:167447600-167447800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:167447600-167447800	Enhancers	Brain Angular Gyrus	brain
18	chr5:167447600-167447800	Enhancers	Esophagus	oesophagus
19	chr5:167447600-167448000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:167447600-167448000	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr5:167447600-167448000	Flanking Active TSS	Fetal Lung	lung
22	chr5:167447600-167448200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:167447600-167448400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:167447600-167449400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr5:167447600-167483000	Weak transcription	Right Atrium	heart

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