Variant report

Variant	rs13359764
Chromosome Location	chr5:167401982-167401983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10042104	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs10065915	0.87[ASN][1000 genomes]
rs10475863	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs11953311	1.00[CEU][hapmap]
rs11954345	1.00[CEU][hapmap]
rs17069337	1.00[CEU][hapmap]
rs17069538	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17069541	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs17069629	1.00[JPT][hapmap]
rs2011893	1.00[CEU][hapmap]
rs2019072	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3909402	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs3909403	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3909404	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4869080	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3322324	chr5:167400349-167402397	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167385800-167407400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:167388200-167407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167391600-167410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:167395200-167406800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167396200-167407000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:167397000-167407800	Weak transcription	Left Ventricle	heart
7	chr5:167397200-167420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:167400200-167405800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:167400800-167402400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:167400800-167409400	Weak transcription	Right Ventricle	heart
11	chr5:167401600-167402200	Enhancers	Esophagus	oesophagus
12	chr5:167401600-167402200	Enhancers	NHEK	skin
13	chr5:167401800-167402400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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