Variant report

Variant	rs10052830
Chromosome Location	chr5:167446601-167446602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167439208..167441791-chr5:167445435..167448219,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10042104	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10064267	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10065915	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10076491	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10475863	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17069538	0.82[AFR][1000 genomes]
rs17069541	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17069614	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17069629	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2011893	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2019072	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3909402	0.87[LWK][hapmap];1.00[MEX][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3909403	0.82[ASW][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3909404	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73803833	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167423400-167455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167434800-167447600	Weak transcription	NH-A	brain
3	chr5:167438000-167448200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:167443000-167449200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167443200-167447400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:167443200-167452000	Weak transcription	HSMM	muscle
7	chr5:167443800-167466000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:167444000-167449600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:167444200-167447000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:167444600-167447200	Weak transcription	NHEK	skin
11	chr5:167444800-167447400	Weak transcription	Right Atrium	heart
12	chr5:167445000-167447400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:167445800-167449200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:167446000-167446800	Enhancers	Fetal Brain Male	brain
15	chr5:167446200-167446800	Enhancers	Left Ventricle	heart
16	chr5:167446200-167447200	Bivalent Enhancer	Fetal Lung	lung
17	chr5:167446200-167449800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:167446400-167447400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:167446400-167447400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:167446600-167453600	Weak transcription	Right Ventricle	heart

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