Variant report

Variant	rs10076491
Chromosome Location	chr5:167443675-167443676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10042104	0.82[EUR][1000 genomes]
rs10052830	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064267	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10065915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10475863	0.81[EUR][1000 genomes]
rs17069541	0.87[EUR][1000 genomes]
rs17069614	1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17069629	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2011893	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2019072	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3909402	0.82[EUR][1000 genomes]
rs3909403	0.82[EUR][1000 genomes]
rs3909404	0.82[EUR][1000 genomes]
rs73803833	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167423400-167455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167434800-167447600	Weak transcription	NH-A	brain
3	chr5:167437200-167444000	Weak transcription	Left Ventricle	heart
4	chr5:167438000-167448200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:167441400-167444600	Weak transcription	Right Atrium	heart
6	chr5:167441800-167446400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167442600-167444600	Strong transcription	NHEK	skin
8	chr5:167442600-167446000	Weak transcription	Fetal Brain Male	brain
9	chr5:167443000-167443800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:167443000-167444200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:167443000-167444600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:167443000-167449200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:167443200-167447400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:167443200-167452000	Weak transcription	HSMM	muscle
15	chr5:167443600-167444000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:167443600-167444800	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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