Variant report

Variant rs2550883
Chromosome Location chr16:75569174-75569175
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:75551200-75589200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr16:75551400-75572200 Weak transcription Cortex derived primary cultured neurospheres brain
3 chr16:75551400-75584000 Weak transcription Right Atrium heart
4 chr16:75551600-75575800 Weak transcription Brain Hippocampus Middle brain
5 chr16:75551800-75572400 Weak transcription Right Ventricle heart
6 chr16:75551800-75578000 Weak transcription Fetal Brain Female brain
7 chr16:75557800-75572400 Weak transcription Brain Cingulate Gyrus brain
8 chr16:75558600-75572000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr16:75561400-75578000 Weak transcription Stomach Smooth Muscle stomach
10 chr16:75561600-75569200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr16:75561800-75579400 Weak transcription Gastric stomach
12 chr16:75563200-75575200 Weak transcription Brain Angular Gyrus brain
13 chr16:75564000-75573800 Weak transcription Ovary ovary
14 chr16:75564000-75578000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr16:75564200-75572400 Weak transcription Brain Germinal Matrix brain
16 chr16:75564200-75572600 Weak transcription Brain Inferior Temporal Lobe brain
17 chr16:75564200-75589200 Weak transcription Lung lung
18 chr16:75564800-75575200 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr16:75567000-75572400 Weak transcription Brain Anterior Caudate brain
20 chr16:75567200-75570400 Active TSS Duodenum Mucosa Duodenum
21 chr16:75567400-75570200 Active TSS Rectal Mucosa Donor 31 rectum
22 chr16:75567600-75570200 Active TSS Rectal Mucosa Donor 29 rectum
23 chr16:75568200-75569400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr16:75568400-75570000 Active TSS Rectal Smooth Muscle rectum
25 chr16:75568600-75569600 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin02 Skin
26 chr16:75568800-75569200 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
27 chr16:75568800-75569200 Active TSS Duodenum Smooth Muscle Duodenum
28 chr16:75568800-75569400 Bivalent/Poised TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr16:75568800-75569400 Active TSS Colonic Mucosa Colon
30 chr16:75568800-75569400 Bivalent Enhancer Fetal Muscle Trunk muscle
31 chr16:75568800-75569600 Active TSS Fetal Intestine Large intestine
32 chr16:75568800-75570000 Enhancers HUES6 Cell Line embryonic stem cell
33 chr16:75568800-75570600 Enhancers Sigmoid Colon Sigmoid Colon
34 chr16:75569000-75569400 Active TSS Fetal Intestine Small intestine
35 chr16:75569000-75570000 Enhancers H1 Cell Line embryonic stem cell
36 chr16:75569000-75570000 Active TSS Small Intestine intestine
37 chr16:75569000-75583800 Weak transcription GM12878-XiMat blood

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