Variant report

Variant	rs255332
Chromosome Location	chr5:94150212-94150213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs153851	0.90[CHB][hapmap]
rs153852	0.90[CHB][hapmap];0.89[CHD][hapmap]
rs36724	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs36727	0.90[CHB][hapmap]
rs36730	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36731	0.90[CHB][hapmap];0.89[CHD][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs255332	ANKRD32	cis	parietal	SCAN
rs255332	CXorf64	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130200-94161600	Weak transcription	HUVEC	blood vessel
2	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:94134600-94164000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:94137600-94170400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94140200-94163800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:94148000-94164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:94148600-94150600	Weak transcription	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links