Variant report

Variant	rs36731
Chromosome Location	chr5:94163672-94163673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs152287	0.82[CEU][hapmap]
rs153851	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153852	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153898	0.87[CEU][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs17418283	0.88[CHD][hapmap]
rs255213	0.81[EUR][1000 genomes]
rs255332	0.90[CHB][hapmap];0.89[CHD][hapmap]
rs36724	0.90[CHB][hapmap];0.89[CHD][hapmap]
rs36725	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36726	0.98[ASN][1000 genomes]
rs36727	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36728	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs36729	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36732	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964907	chr5:94161637-94166013	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36731	CMTM4	trans	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94134600-94164000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:94137600-94170400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:94140200-94163800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:94148000-94164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:94157000-94168200	Weak transcription	Thymus	Thymus
7	chr5:94160000-94168200	Weak transcription	GM12878-XiMat	blood
8	chr5:94161400-94163800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:94162000-94164000	Weak transcription	Adipose Nuclei	Adipose
10	chr5:94162400-94163800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:94162400-94164000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:94162400-94164000	Weak transcription	Lung	lung
13	chr5:94162400-94164000	Weak transcription	Spleen	Spleen
14	chr5:94162400-94164600	Weak transcription	HUVEC	blood vessel
15	chr5:94162400-94184800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr5:94162600-94164200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:94162600-94169600	Weak transcription	Gastric	stomach
18	chr5:94163000-94163800	Weak transcription	Fetal Thymus	thymus
19	chr5:94163000-94165400	Weak transcription	Right Ventricle	heart
20	chr5:94163400-94182600	Weak transcription	Brain Anterior Caudate	brain
21	chr5:94163600-94165600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links