Variant report

Variant	rs36729
Chromosome Location	chr5:94162706-94162707
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs153851	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs153852	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs255213	0.83[EUR][1000 genomes]
rs36725	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36726	0.94[ASN][1000 genomes]
rs36727	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36728	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs36731	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36732	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964907	chr5:94161637-94166013	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94134600-94164000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:94137600-94170400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:94140200-94163800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:94148000-94164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:94157000-94168200	Weak transcription	Thymus	Thymus
7	chr5:94160000-94168200	Weak transcription	GM12878-XiMat	blood
8	chr5:94161400-94163800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:94161600-94163000	Enhancers	Fetal Thymus	thymus
10	chr5:94161800-94163600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:94162000-94164000	Weak transcription	Adipose Nuclei	Adipose
12	chr5:94162400-94163800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:94162400-94164000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:94162400-94164000	Weak transcription	Lung	lung
15	chr5:94162400-94164000	Weak transcription	Spleen	Spleen
16	chr5:94162400-94164600	Weak transcription	HUVEC	blood vessel
17	chr5:94162400-94184800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:94162600-94164200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr5:94162600-94169600	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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