Variant report

Variant	rs2553825
Chromosome Location	chr11:35099386-35099387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35097231..35099674-chr11:35101240..35103980,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11032991	0.90[AFR][1000 genomes]
rs11032994	0.84[JPT][hapmap]
rs11032995	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs1885936	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35091200-35099800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:35097600-35099600	Enhancers	Hela-S3	cervix
3	chr11:35097600-35101400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:35097600-35103800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr11:35097600-35106400	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:35097800-35099400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:35097800-35099400	Enhancers	K562	blood
8	chr11:35097800-35099600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:35097800-35101000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:35097800-35102400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:35097800-35106600	Enhancers	Fetal Thymus	thymus
12	chr11:35098000-35101200	Enhancers	HUVEC	blood vessel
13	chr11:35098000-35101400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:35098200-35100200	Flanking Active TSS	Dnd41	blood
15	chr11:35098200-35101400	Enhancers	Primary hematopoietic stem cells	blood
16	chr11:35098200-35101800	Enhancers	Thymus	Thymus
17	chr11:35098200-35102400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:35098400-35099400	Weak transcription	NHLF	lung
19	chr11:35098400-35100000	Enhancers	NH-A	brain
20	chr11:35098400-35100800	Enhancers	NHEK	skin
21	chr11:35098400-35101400	Enhancers	HMEC	breast
22	chr11:35098600-35099400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:35098600-35099800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:35098600-35099800	Weak transcription	Spleen	Spleen
25	chr11:35098600-35101400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr11:35098600-35101400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr11:35098600-35103200	Weak transcription	Adipose Nuclei	Adipose
28	chr11:35098800-35100000	Weak transcription	Esophagus	oesophagus
29	chr11:35098800-35100600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:35098800-35103400	Weak transcription	Pancreas	Pancrea
31	chr11:35098800-35103600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:35098800-35103800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:35098800-35104000	Weak transcription	Psoas Muscle	Psoas
34	chr11:35098800-35104000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:35098800-35104000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:35098800-35105400	Weak transcription	Small Intestine	intestine
37	chr11:35099000-35099800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:35099000-35100000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:35099000-35100200	Flanking Active TSS	Primary B cells from cord blood	blood
40	chr11:35099000-35100200	Flanking Active TSS	GM12878-XiMat	blood
41	chr11:35099000-35100400	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr11:35099000-35100400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr11:35099000-35100800	Enhancers	Osteobl	bone
44	chr11:35099000-35101200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:35099000-35101400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:35099200-35099400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:35099200-35099400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:35099200-35099400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:35099200-35099600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
50	chr11:35099200-35099600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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