Variant report

Variant	rs2554365
Chromosome Location	chr5:94334559-94334560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10060211	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs188412	0.89[ASN][1000 genomes]
rs295207	0.89[ASN][1000 genomes]
rs295209	0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs309802	0.81[EUR][1000 genomes]
rs309810	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs365895	0.89[ASN][1000 genomes]
rs372885	0.88[ASN][1000 genomes]
rs378228	0.85[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs380413	0.89[ASN][1000 genomes]
rs387468	0.89[ASN][1000 genomes]
rs414007	0.89[ASN][1000 genomes]
rs435219	0.89[ASN][1000 genomes]
rs436063	0.89[ASN][1000 genomes]
rs436206	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs451038	0.80[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7715499	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94301200-94337600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94313800-94337000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr5:94319800-94346600	Weak transcription	HUVEC	blood vessel
4	chr5:94320400-94348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:94325600-94337600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94325800-94337400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:94326000-94339400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:94327000-94339200	Weak transcription	Primary T cells from cord blood	blood
9	chr5:94327200-94339000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:94330400-94336600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr5:94334000-94334600	Enhancers	HepG2	liver
12	chr5:94334200-94334600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:94334200-94334600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:94334200-94334600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:94334200-94334600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:94334200-94334600	Flanking Active TSS	Stomach Mucosa	stomach
17	chr5:94334200-94334800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:94334200-94334800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:94334200-94334800	Enhancers	Gastric	stomach
20	chr5:94334200-94334800	Active TSS	Osteobl	bone
21	chr5:94334400-94334600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:94334400-94334800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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