Variant report

Variant	rs309810
Chromosome Location	chr5:94336742-94336743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10060211	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs188412	0.81[EUR][1000 genomes]
rs2554365	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs295207	0.81[EUR][1000 genomes]
rs309802	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs309808	0.80[ASN][1000 genomes]
rs365895	0.82[EUR][1000 genomes]
rs372885	0.82[EUR][1000 genomes]
rs380413	0.82[EUR][1000 genomes]
rs387468	0.81[EUR][1000 genomes]
rs414007	0.82[EUR][1000 genomes]
rs435219	0.82[EUR][1000 genomes]
rs436063	0.82[EUR][1000 genomes]
rs451038	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94301200-94337600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94313800-94337000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr5:94319800-94346600	Weak transcription	HUVEC	blood vessel
4	chr5:94320400-94348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:94325600-94337600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94325800-94337400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:94326000-94339400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:94327000-94339200	Weak transcription	Primary T cells from cord blood	blood
9	chr5:94327200-94339000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:94334600-94339000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:94334800-94337800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:94334800-94353400	Weak transcription	Gastric	stomach
13	chr5:94334800-94358200	Weak transcription	Stomach Mucosa	stomach
14	chr5:94336600-94337400	Strong transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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