Variant report

Variant	rs2555352
Chromosome Location	chr15:44870218-44870219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:44870080-44870230	GM12873	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44866669..44868374-chr15:44868435..44870746,2	K562	blood:
2	chr15:44870128..44872435-chr15:45004857..45007890,3	K562	blood:

Variant related genes	Relation type
SPG11	TF binding region
ENSG00000166710	Chromatin interaction
ENSG00000104133	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12594578	1.00[ASW][hapmap]
rs2303577	1.00[ASW][hapmap]
rs35286810	1.00[ASW][hapmap]
rs35932349	1.00[ASW][hapmap]
rs3759873	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44844000-44870400	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr15:44858000-44900200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:44858400-44897200	Strong transcription	Fetal Stomach	stomach
5	chr15:44858600-44877800	Weak transcription	HUVEC	blood vessel
6	chr15:44858600-44880800	Strong transcription	Fetal Intestine Small	intestine
7	chr15:44858800-44870600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:44858800-44870600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:44859000-44872000	Weak transcription	NH-A	brain
10	chr15:44859000-44875200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:44859000-44878800	Weak transcription	Stomach Mucosa	stomach
12	chr15:44859000-44881200	Weak transcription	Fetal Brain Male	brain
13	chr15:44859000-44887800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:44859200-44875800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:44859200-44875800	Weak transcription	Small Intestine	intestine
16	chr15:44859800-44880800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr15:44859800-44887600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:44860200-44874200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:44860800-44875000	Weak transcription	A549	lung
20	chr15:44861600-44882200	Weak transcription	Psoas Muscle	Psoas
21	chr15:44863200-44870600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:44863400-44874400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:44863400-44876000	Weak transcription	Pancreas	Pancrea
24	chr15:44863400-44881000	Weak transcription	Right Ventricle	heart
25	chr15:44863600-44874200	Weak transcription	HSMM	muscle
26	chr15:44865000-44871800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:44865000-44871800	Weak transcription	K562	blood
28	chr15:44865000-44872000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:44865000-44875800	Weak transcription	HMEC	breast
30	chr15:44865200-44874000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr15:44865200-44874600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr15:44865800-44870800	Weak transcription	Fetal Kidney	kidney
33	chr15:44865800-44871800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:44866000-44870600	Weak transcription	Brain Anterior Caudate	brain
35	chr15:44866000-44872000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:44866000-44873000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:44866000-44875000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:44866000-44875000	Weak transcription	HepG2	liver
39	chr15:44866000-44875400	Weak transcription	Spleen	Spleen
40	chr15:44866200-44872000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:44866200-44874400	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:44866200-44874600	Weak transcription	Brain Angular Gyrus	brain
43	chr15:44866200-44875600	Weak transcription	NHDF-Ad	bronchial
44	chr15:44866200-44875800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr15:44866200-44875800	Weak transcription	Ovary	ovary
46	chr15:44866400-44871800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:44866400-44872400	Weak transcription	Placenta	Placenta
48	chr15:44866400-44875200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:44866600-44874600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:44866600-44875200	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links