Variant report

Variant	rs12594578
Chromosome Location	chr15:44934061-44934062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10152685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10152710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10162700	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12324710	1.00[CEU][hapmap]
rs12591118	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591508	0.83[EUR][1000 genomes]
rs12592447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592479	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12594924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594967	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12595615	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12595838	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12911238	1.00[EUR][1000 genomes]
rs2277610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2288341	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2303577	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.86[ASN][1000 genomes]
rs2303578	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2412908	1.00[CEU][hapmap]
rs2555352	1.00[ASW][hapmap]
rs35286810	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35932349	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.89[ASN][1000 genomes]
rs3759873	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap]
rs57488532	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7163287	0.83[EUR][1000 genomes]
rs7179390	1.00[CEU][hapmap]
rs8037922	1.00[EUR][1000 genomes]
rs8040923	1.00[EUR][1000 genomes]
rs9806511	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1516	chr15:44896162-44941091	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:44872000-44935600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:44872400-44934400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:44881800-44934600	Strong transcription	Liver	Liver
7	chr15:44890000-44954800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:44894000-44935600	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr15:44897200-44939400	Weak transcription	Stomach Mucosa	stomach
10	chr15:44900600-44943400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:44900800-44955000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:44903000-44934400	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:44906200-44943600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:44906600-44938200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:44907000-44938400	Weak transcription	Aorta	Aorta
16	chr15:44907800-44943200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:44909400-44943600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:44909800-44938000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:44916200-44947000	Weak transcription	Esophagus	oesophagus
20	chr15:44916600-44935000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:44918000-44952800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr15:44918400-44935400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr15:44921200-44934400	Strong transcription	Fetal Stomach	stomach
24	chr15:44921400-44940600	Weak transcription	Fetal Brain Male	brain
25	chr15:44921600-44935600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:44921600-44939800	Weak transcription	NH-A	brain
27	chr15:44921600-44943400	Weak transcription	Fetal Heart	heart
28	chr15:44922800-44938000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:44922800-44943600	Weak transcription	Gastric	stomach
30	chr15:44923000-44942400	Weak transcription	Right Ventricle	heart
31	chr15:44924200-44938600	Weak transcription	Colonic Mucosa	Colon
32	chr15:44924600-44938200	Weak transcription	HMEC	breast
33	chr15:44925400-44938000	Weak transcription	Psoas Muscle	Psoas
34	chr15:44925400-44938200	Weak transcription	Brain Substantia Nigra	brain
35	chr15:44925400-44938600	Weak transcription	Brain Angular Gyrus	brain
36	chr15:44925400-44938600	Weak transcription	NHLF	lung
37	chr15:44925400-44939200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr15:44925400-44947400	Weak transcription	HSMMtube	muscle
39	chr15:44925600-44938200	Weak transcription	Pancreas	Pancrea
40	chr15:44925600-44938400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:44925800-44938200	Weak transcription	Fetal Kidney	kidney
42	chr15:44925800-44938800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr15:44926000-44938400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:44926200-44938400	Weak transcription	HUVEC	blood vessel
45	chr15:44926200-44938600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:44926400-44934400	Strong transcription	Duodenum Mucosa	Duodenum
47	chr15:44926400-44938800	Weak transcription	NHEK	skin
48	chr15:44926400-44952800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:44927600-44936000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:44928000-44938400	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links