Variant report

Variant	rs10152710
Chromosome Location	chr15:44843246-44843247
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:44842963-44843303	GM12891	blood:	n/a	n/a
2	POLR2A	chr15:44842992-44843461	K562	blood:	n/a	n/a
3	YY1	chr15:44843011-44843275	GM12892	blood:	n/a	chr15:44843144-44843154
4	POLR2A	chr15:44843207-44843400	HUVEC	blood vessel:	n/a	n/a
5	NFYB	chr15:44843130-44843429	GM12878	blood:	n/a	n/a
6	YY1	chr15:44843038-44843259	GM12891	blood:	n/a	chr15:44843144-44843154
7	SPI1	chr15:44842884-44843288	HL-60	blood:	n/a	n/a
8	YY1	chr15:44843030-44843261	GM12878	blood:	n/a	chr15:44843144-44843154
9	MXI1	chr15:44841989-44843706	SK-N-SH	brain:	n/a	n/a
10	CTCF	chr15:44843100-44843250	SK-N-SH_RA	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44829011..44830774-chr15:44841931..44844429,2	MCF-7	breast:
2	chr15:44843060..44845487-chr15:44846368..44848756,2	MCF-7	breast:

Variant related genes	Relation type
EIF3J	TF binding region
ENSG00000104131	Chromatin interaction
ENSG00000179523	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10152685	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1021800	1.00[EUR][1000 genomes]
rs10467910	1.00[YRI][hapmap]
rs10467977	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12591118	0.86[ASN][1000 genomes]
rs12591178	0.94[EUR][1000 genomes]
rs12591581	1.00[EUR][1000 genomes]
rs12591811	0.88[EUR][1000 genomes]
rs12592447	0.86[ASN][1000 genomes]
rs12592479	0.86[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs12592995	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12593125	0.94[EUR][1000 genomes]
rs12593325	1.00[EUR][1000 genomes]
rs12593632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12593686	0.88[EUR][1000 genomes]
rs12593943	0.88[EUR][1000 genomes]
rs12594110	1.00[EUR][1000 genomes]
rs12594139	0.88[EUR][1000 genomes]
rs12594167	0.94[EUR][1000 genomes]
rs12594578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12594621	0.88[EUR][1000 genomes]
rs12594645	0.88[EUR][1000 genomes]
rs12594746	0.94[EUR][1000 genomes]
rs12594924	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12594967	0.86[ASN][1000 genomes]
rs12595484	0.88[EUR][1000 genomes]
rs12595615	0.81[ASN][1000 genomes]
rs17551416	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2055061	0.94[EUR][1000 genomes]
rs2277610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2288341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2288342	0.94[EUR][1000 genomes]
rs2303577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412883	0.94[EUR][1000 genomes]
rs2412909	0.94[EUR][1000 genomes]
rs2433350	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2555353	0.94[EUR][1000 genomes]
rs2556566	0.94[EUR][1000 genomes]
rs2556567	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs28508235	0.88[EUR][1000 genomes]
rs28561508	0.94[EUR][1000 genomes]
rs2899113	1.00[EUR][1000 genomes]
rs35286810	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs35555389	0.94[EUR][1000 genomes]
rs35932349	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3759873	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3784565	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs3784567	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs3809471	0.94[EUR][1000 genomes]
rs3816928	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs3986142	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs3986143	0.94[EUR][1000 genomes]
rs4415978	0.94[EUR][1000 genomes]
rs4477677	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4513066	1.00[YRI][hapmap]
rs4577056	0.94[EUR][1000 genomes]
rs57270586	0.94[EUR][1000 genomes]
rs57488532	0.81[ASN][1000 genomes]
rs58956090	0.94[EUR][1000 genomes]
rs59230801	0.94[EUR][1000 genomes]
rs59997416	0.88[EUR][1000 genomes]
rs60003667	0.94[EUR][1000 genomes]
rs60399672	0.94[EUR][1000 genomes]
rs61185650	0.94[EUR][1000 genomes]
rs61234123	0.94[EUR][1000 genomes]
rs61258861	0.94[EUR][1000 genomes]
rs61278540	0.88[EUR][1000 genomes]
rs61329003	0.94[EUR][1000 genomes]
rs61501839	0.94[EUR][1000 genomes]
rs7162671	0.88[EUR][1000 genomes]
rs7162802	0.88[EUR][1000 genomes]
rs7163529	0.88[EUR][1000 genomes]
rs7164709	0.88[EUR][1000 genomes]
rs7166278	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7166945	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7167752	0.88[EUR][1000 genomes]
rs7169333	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7170248	0.94[EUR][1000 genomes]
rs7172106	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7175200	0.88[EUR][1000 genomes]
rs7178318	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7179894	0.88[EUR][1000 genomes]
rs7181772	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7183109	0.83[EUR][1000 genomes]
rs8023453	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs8024623	0.88[EUR][1000 genomes]
rs8024805	0.88[EUR][1000 genomes]
rs8025727	0.88[EUR][1000 genomes]
rs8025876	0.94[EUR][1000 genomes]
rs8025955	0.88[EUR][1000 genomes]
rs8026945	0.94[EUR][1000 genomes]
rs8027036	0.94[EUR][1000 genomes]
rs8028509	0.94[EUR][1000 genomes]
rs8032079	0.88[EUR][1000 genomes]
rs8037395	0.88[EUR][1000 genomes]
rs883943	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs905302	1.00[YRI][hapmap]
rs9672237	0.94[EUR][1000 genomes]
rs9673085	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9806596	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44830400-44844000	Weak transcription	Lung	lung
2	chr15:44830400-44844400	Weak transcription	Spleen	Spleen
3	chr15:44830400-44848600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:44830400-44850200	Weak transcription	Aorta	Aorta
5	chr15:44830400-44855200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:44830400-44855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:44830800-44844400	Weak transcription	Colonic Mucosa	Colon
8	chr15:44831000-44844000	Weak transcription	Thymus	Thymus
9	chr15:44831000-44844400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:44831000-44844800	Weak transcription	Right Ventricle	heart
11	chr15:44831000-44856800	Weak transcription	Fetal Brain Male	brain
12	chr15:44833000-44844400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:44833600-44844800	Weak transcription	Fetal Lung	lung
14	chr15:44833800-44843800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:44833800-44844000	Weak transcription	Placenta	Placenta
16	chr15:44833800-44844600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr15:44833800-44857200	Weak transcription	Small Intestine	intestine
18	chr15:44834000-44844000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr15:44834000-44844400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:44834200-44844600	Weak transcription	Brain Substantia Nigra	brain
21	chr15:44834200-44844800	Weak transcription	Fetal Kidney	kidney
22	chr15:44834400-44843400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:44834600-44843400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr15:44834600-44844400	Weak transcription	Fetal Brain Female	brain
25	chr15:44834600-44846200	Weak transcription	Brain Germinal Matrix	brain
26	chr15:44835000-44844000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr15:44835000-44844800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:44835000-44847200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:44835200-44844800	Weak transcription	HepG2	liver
30	chr15:44835600-44843800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:44835600-44844600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:44835800-44844000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:44836000-44844800	Weak transcription	Ovary	ovary
34	chr15:44836600-44844000	Weak transcription	Gastric	stomach
35	chr15:44837400-44844000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:44838200-44843800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:44838200-44844000	Weak transcription	Esophagus	oesophagus
38	chr15:44838400-44847200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:44838400-44857200	Weak transcription	Stomach Mucosa	stomach
40	chr15:44838600-44843400	Weak transcription	A549	lung
41	chr15:44838800-44843600	Weak transcription	HUVEC	blood vessel
42	chr15:44838800-44844000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:44838800-44844400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:44838800-44844400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:44838800-44844800	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:44838800-44847200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr15:44838800-44849400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:44839000-44843800	Weak transcription	Brain Hippocampus Middle	brain
49	chr15:44839000-44844000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:44839000-44844000	Weak transcription	Pancreas	Pancrea

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