Variant report

Variant	rs7178318
Chromosome Location	chr15:44835213-44835214
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:44496752..44498344-chr15:44833726..44836502,2	K562	blood:
2	chr15:44627409..44629841-chr15:44832460..44835215,2	MCF-7	breast:
3	chr15:44717666..44720923-chr15:44833065..44836487,4	K562	blood:
4	chr15:44810915..44813289-chr15:44834078..44836111,2	K562	blood:

Variant related genes	Relation type
ENSG00000137770	Chromatin interaction
ENSG00000259595	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10152710	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10162700	0.92[JPT][hapmap]
rs1021800	0.94[EUR][1000 genomes]
rs10467977	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12324194	0.84[ASN][1000 genomes]
rs12324710	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs12591178	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12591581	0.94[EUR][1000 genomes]
rs12591811	0.94[EUR][1000 genomes]
rs12591898	1.00[CHB][hapmap]
rs12592995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12593125	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12593325	0.94[EUR][1000 genomes]
rs12593686	0.94[EUR][1000 genomes]
rs12593943	0.94[EUR][1000 genomes]
rs12594110	0.94[EUR][1000 genomes]
rs12594139	0.94[EUR][1000 genomes]
rs12594167	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12594463	1.00[CHB][hapmap]
rs12594621	0.94[EUR][1000 genomes]
rs12594645	0.94[EUR][1000 genomes]
rs12594746	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12594905	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.84[ASN][1000 genomes]
rs12594910	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12595484	0.94[EUR][1000 genomes]
rs12595838	0.92[JPT][hapmap]
rs17551416	0.94[EUR][1000 genomes]
rs2055061	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2288341	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2288342	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2303577	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2303578	0.87[EUR][1000 genomes]
rs2412883	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2412909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2433350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2555353	0.83[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2556562	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2556566	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2556567	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28508235	0.94[EUR][1000 genomes]
rs28561508	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2899113	0.94[EUR][1000 genomes]
rs2899119	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35555389	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3784565	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3784567	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3809471	1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs3816928	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3986142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3986143	0.92[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4415978	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4477677	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4577056	1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs57270586	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58956090	1.00[EUR][1000 genomes]
rs59230801	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59891213	0.80[ASN][1000 genomes]
rs59997416	0.94[EUR][1000 genomes]
rs60003667	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60238894	0.80[ASN][1000 genomes]
rs60399672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61185650	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61234123	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61258861	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61278540	0.94[EUR][1000 genomes]
rs61329003	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61501839	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6493103	0.82[EUR][1000 genomes]
rs7162671	0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes]
rs7162802	0.94[EUR][1000 genomes]
rs7163287	0.99[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7163529	0.94[EUR][1000 genomes]
rs7164709	1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[EUR][1000 genomes]
rs7166278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7166945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7167752	0.94[EUR][1000 genomes]
rs7167870	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7169333	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7170248	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7172106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7175200	0.94[EUR][1000 genomes]
rs7179390	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7179894	0.94[EUR][1000 genomes]
rs7181772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7183109	0.89[EUR][1000 genomes]
rs73417597	0.84[ASN][1000 genomes]
rs8023453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8024623	0.94[EUR][1000 genomes]
rs8024805	0.94[EUR][1000 genomes]
rs8025727	0.94[EUR][1000 genomes]
rs8025876	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8025955	0.94[EUR][1000 genomes]
rs8026945	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8027036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8028509	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028907	0.82[EUR][1000 genomes]
rs8032079	0.94[EUR][1000 genomes]
rs8037395	0.82[EUR][1000 genomes]
rs883943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9672237	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9673085	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9806511	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9806725	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44830400-44835400	Weak transcription	Pancreas	Pancrea
2	chr15:44830400-44835600	Weak transcription	Gastric	stomach
3	chr15:44830400-44844000	Weak transcription	Lung	lung
4	chr15:44830400-44844400	Weak transcription	Spleen	Spleen
5	chr15:44830400-44848600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:44830400-44850200	Weak transcription	Aorta	Aorta
7	chr15:44830400-44855200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:44830400-44855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:44830600-44835400	Weak transcription	Right Atrium	heart
10	chr15:44830800-44840400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:44830800-44844400	Weak transcription	Colonic Mucosa	Colon
12	chr15:44831000-44836200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:44831000-44838000	Weak transcription	Stomach Mucosa	stomach
14	chr15:44831000-44844000	Weak transcription	Thymus	Thymus
15	chr15:44831000-44844400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:44831000-44844800	Weak transcription	Right Ventricle	heart
17	chr15:44831000-44856800	Weak transcription	Fetal Brain Male	brain
18	chr15:44831200-44835600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:44831200-44836000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:44831200-44836600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:44831200-44837000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr15:44831200-44838000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:44832200-44837200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:44832400-44836400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr15:44832400-44836400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
26	chr15:44832600-44835800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr15:44832600-44836200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:44832600-44836200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr15:44832600-44836600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:44832800-44835600	Enhancers	Fetal Heart	heart
31	chr15:44832800-44836200	Enhancers	Colon Smooth Muscle	Colon
32	chr15:44832800-44836600	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr15:44832800-44840200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:44833000-44836200	Genic enhancers	Hela-S3	cervix
35	chr15:44833000-44838600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:44833000-44844400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr15:44833200-44835600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:44833200-44835800	Weak transcription	Fetal Intestine Small	intestine
39	chr15:44833200-44836400	Weak transcription	Fetal Stomach	stomach
40	chr15:44833400-44836200	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr15:44833600-44835600	Enhancers	Brain Angular Gyrus	brain
42	chr15:44833600-44836400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr15:44833600-44844800	Weak transcription	Fetal Lung	lung
44	chr15:44833800-44835400	Weak transcription	Ovary	ovary
45	chr15:44833800-44835600	Enhancers	Brain Anterior Caudate	brain
46	chr15:44833800-44836000	Enhancers	Liver	Liver
47	chr15:44833800-44836400	Weak transcription	Left Ventricle	heart
48	chr15:44833800-44837400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr15:44833800-44838000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:44833800-44840600	Weak transcription	Fetal Muscle Leg	muscle

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