Variant report

Variant	rs9806511
Chromosome Location	chr15:44897745-44897746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44885987..44888786-chr15:44895470..44898152,2	K562	blood:

Variant related genes	Relation type
ENSG00000104133	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10152685	1.00[CEU][hapmap]
rs10162700	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12324194	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12324710	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591178	0.90[JPT][hapmap]
rs12591508	0.86[EUR][1000 genomes]
rs12591898	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12592479	1.00[CEU][hapmap]
rs12592995	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12593632	1.00[CEU][hapmap]
rs12594167	0.90[JPT][hapmap]
rs12594463	1.00[CHB][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12594578	1.00[CEU][hapmap]
rs12594905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12594910	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12594924	1.00[CEU][hapmap]
rs12595838	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2277610	1.00[CEU][hapmap]
rs2288342	0.86[ASN][1000 genomes]
rs2291647	1.00[TSI][hapmap]
rs2412908	1.00[CEU][hapmap]
rs2412909	0.84[ASN][1000 genomes]
rs2433350	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2555353	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2556566	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs28561508	0.80[ASN][1000 genomes]
rs35286810	1.00[CEU][hapmap]
rs35932349	1.00[CEU][hapmap]
rs3759873	1.00[CEU][hapmap]
rs3784565	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs3784567	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs3809471	0.90[JPT][hapmap]
rs3816928	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs3986142	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs3986143	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs4477677	0.90[JPT][hapmap]
rs4577056	0.90[JPT][hapmap]
rs58491010	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59891213	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60238894	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7163287	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7165017	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7166278	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7166945	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7169333	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs7172106	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7175978	1.00[TSI][hapmap]
rs7176018	1.00[TSI][hapmap]
rs7178318	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7179390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7181772	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs73417597	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8023453	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs8026945	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs8027036	0.84[ASN][1000 genomes]
rs883943	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs9672237	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs9673085	0.92[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1516	chr15:44896162-44941091	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44858000-44900200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:44867600-44900000	Weak transcription	Fetal Heart	heart
5	chr15:44870000-44928800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:44871400-44907600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:44871400-44932200	Strong transcription	Fetal Muscle Trunk	muscle
9	chr15:44871600-44903200	Strong transcription	Adipose Nuclei	Adipose
10	chr15:44871600-44917800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:44871800-44924400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:44871800-44925000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:44872000-44903600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:44872000-44935600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:44872200-44923200	Strong transcription	Fetal Intestine Large	intestine
16	chr15:44872400-44934400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:44873000-44913400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:44873800-44901400	Strong transcription	Placenta	Placenta
19	chr15:44874400-44900800	Strong transcription	Left Ventricle	heart
20	chr15:44874400-44901000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:44874800-44928600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:44879800-44900200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:44881800-44934600	Strong transcription	Liver	Liver
24	chr15:44882000-44908200	Strong transcription	Duodenum Mucosa	Duodenum
25	chr15:44882800-44904600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:44884000-44910000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:44885800-44900000	Weak transcription	Fetal Brain Male	brain
28	chr15:44886200-44917600	Strong transcription	Primary B cells from peripheral blood	blood
29	chr15:44888200-44897800	Weak transcription	A549	lung
30	chr15:44888600-44898600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr15:44888600-44900000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:44888600-44900200	Weak transcription	Esophagus	oesophagus
33	chr15:44888600-44906000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr15:44889200-44909200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:44889400-44925600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:44890000-44899800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:44890000-44905000	Weak transcription	Pancreas	Pancrea
38	chr15:44890000-44954800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:44890200-44900000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:44890400-44899400	Weak transcription	Right Ventricle	heart
41	chr15:44890400-44900200	Weak transcription	Aorta	Aorta
42	chr15:44890800-44898600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:44891000-44899000	Weak transcription	NHLF	lung
44	chr15:44891200-44898600	Weak transcription	Brain Anterior Caudate	brain
45	chr15:44891200-44898600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr15:44891200-44899200	Weak transcription	Brain Germinal Matrix	brain
47	chr15:44891200-44899200	Weak transcription	Brain Substantia Nigra	brain
48	chr15:44891200-44899200	Weak transcription	Fetal Brain Female	brain
49	chr15:44891200-44899400	Weak transcription	Gastric	stomach
50	chr15:44891200-44899400	Weak transcription	Psoas Muscle	Psoas

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