Variant report

Variant	rs10162700
Chromosome Location	chr15:44875053-44875054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10152685	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12324005	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12324710	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs12591118	1.00[EUR][1000 genomes]
rs12591178	0.80[CHB][hapmap];0.92[JPT][hapmap]
rs12591508	0.83[EUR][1000 genomes]
rs12591898	0.85[JPT][hapmap]
rs12592447	1.00[EUR][1000 genomes]
rs12592479	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12592995	0.92[JPT][hapmap]
rs12593632	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12594167	0.80[CHB][hapmap];0.92[JPT][hapmap]
rs12594463	0.84[JPT][hapmap]
rs12594578	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12594905	1.00[JPT][hapmap]
rs12594924	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12594967	1.00[EUR][1000 genomes]
rs12595838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12911238	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13380093	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2277610	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2412908	1.00[CEU][hapmap]
rs2433350	0.92[JPT][hapmap]
rs2555353	0.84[JPT][hapmap]
rs2556566	0.92[JPT][hapmap]
rs28566474	1.00[AMR][1000 genomes]
rs35286810	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs35932349	1.00[CEU][hapmap]
rs3759873	1.00[CEU][hapmap]
rs3784565	0.92[JPT][hapmap]
rs3784567	0.92[JPT][hapmap]
rs3809471	0.80[CHB][hapmap];0.92[JPT][hapmap]
rs3816928	0.92[JPT][hapmap]
rs3986142	0.92[JPT][hapmap]
rs3986143	0.84[JPT][hapmap]
rs4477677	0.80[CHB][hapmap];0.92[JPT][hapmap]
rs4577056	0.80[CHB][hapmap];0.92[JPT][hapmap]
rs57488532	1.00[EUR][1000 genomes]
rs62024130	1.00[AMR][1000 genomes]
rs7162671	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs7163287	0.83[EUR][1000 genomes]
rs7166278	0.92[JPT][hapmap]
rs7166945	0.92[JPT][hapmap]
rs7169333	0.92[JPT][hapmap]
rs7172106	0.92[JPT][hapmap]
rs7178318	0.92[JPT][hapmap]
rs7179390	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7181772	0.92[JPT][hapmap]
rs8023453	0.92[JPT][hapmap]
rs8026945	0.92[JPT][hapmap]
rs8037922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040923	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs883943	0.92[JPT][hapmap]
rs9672237	0.92[JPT][hapmap]
rs9673085	0.92[JPT][hapmap]
rs9806511	1.00[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44858000-44900200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:44858400-44897200	Strong transcription	Fetal Stomach	stomach
4	chr15:44858600-44877800	Weak transcription	HUVEC	blood vessel
5	chr15:44858600-44880800	Strong transcription	Fetal Intestine Small	intestine
6	chr15:44859000-44875200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:44859000-44878800	Weak transcription	Stomach Mucosa	stomach
8	chr15:44859000-44881200	Weak transcription	Fetal Brain Male	brain
9	chr15:44859000-44887800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:44859200-44875800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:44859200-44875800	Weak transcription	Small Intestine	intestine
12	chr15:44859800-44880800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:44859800-44887600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:44861600-44882200	Weak transcription	Psoas Muscle	Psoas
15	chr15:44863400-44876000	Weak transcription	Pancreas	Pancrea
16	chr15:44863400-44881000	Weak transcription	Right Ventricle	heart
17	chr15:44865000-44875800	Weak transcription	HMEC	breast
18	chr15:44866000-44875400	Weak transcription	Spleen	Spleen
19	chr15:44866200-44875600	Weak transcription	NHDF-Ad	bronchial
20	chr15:44866200-44875800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:44866200-44875800	Weak transcription	Ovary	ovary
22	chr15:44866400-44875200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:44866600-44875200	Weak transcription	Gastric	stomach
24	chr15:44866800-44875600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:44867000-44875400	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:44867200-44875400	Weak transcription	Aorta	Aorta
27	chr15:44867200-44875600	Weak transcription	Brain Germinal Matrix	brain
28	chr15:44867200-44875600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:44867200-44875800	Weak transcription	HSMMtube	muscle
30	chr15:44867400-44875200	Weak transcription	NHLF	lung
31	chr15:44867400-44875800	Weak transcription	Brain Substantia Nigra	brain
32	chr15:44867400-44875800	Weak transcription	Colonic Mucosa	Colon
33	chr15:44867400-44876000	Weak transcription	Esophagus	oesophagus
34	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:44867600-44875800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr15:44867600-44879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:44867600-44900000	Weak transcription	Fetal Heart	heart
38	chr15:44869800-44887400	Strong transcription	Fetal Lung	lung
39	chr15:44870000-44928800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:44871000-44879000	Weak transcription	Fetal Kidney	kidney
41	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr15:44871400-44877000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:44871400-44890200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:44871400-44907600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:44871400-44932200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr15:44871600-44875200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr15:44871600-44876000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:44871600-44882400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:44871600-44894000	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr15:44871600-44903200	Strong transcription	Adipose Nuclei	Adipose

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