Variant report

Variant	rs7166945
Chromosome Location	chr15:44827924-44827925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr15:44827919-44830343	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:44827692-44828156	HepG2	liver:	n/a	n/a
3	POLR2A	chr15:44827914-44830200	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:44562480..44565823-chr15:44827596..44830231,3	K562	blood:
2	chr15:44580146..44582349-chr15:44827451..44829460,2	MCF-7	breast:
3	chr15:44562480..44564339-chr15:44827596..44829843,2	K562	blood:

Variant related genes	Relation type
EIF3J	TF binding region
ENSG00000166734	Chromatin interaction
ENSG00000203578	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10152710	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10162700	0.92[JPT][hapmap]
rs1021800	0.94[EUR][1000 genomes]
rs10467977	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12324194	0.82[ASN][1000 genomes]
rs12324710	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12591178	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12591581	0.94[EUR][1000 genomes]
rs12591811	0.94[EUR][1000 genomes]
rs12591898	1.00[CHB][hapmap]
rs12592995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12593125	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12593325	0.94[EUR][1000 genomes]
rs12593686	0.94[EUR][1000 genomes]
rs12593943	0.94[EUR][1000 genomes]
rs12594110	0.94[EUR][1000 genomes]
rs12594139	0.94[EUR][1000 genomes]
rs12594167	1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12594463	1.00[CHB][hapmap]
rs12594621	0.94[EUR][1000 genomes]
rs12594645	0.94[EUR][1000 genomes]
rs12594746	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12594905	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs12594910	0.82[ASN][1000 genomes]
rs12595484	0.94[EUR][1000 genomes]
rs12595838	0.92[JPT][hapmap]
rs17551416	0.94[EUR][1000 genomes]
rs2055061	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2288341	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2288342	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2303577	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2303578	0.87[EUR][1000 genomes]
rs2412883	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2412909	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2433350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2555353	0.83[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2556562	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2556566	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2556567	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28508235	0.94[EUR][1000 genomes]
rs28561508	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2899113	0.94[EUR][1000 genomes]
rs2899119	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35555389	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3784565	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3784567	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3809471	1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3816928	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3986142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3986143	0.92[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4415978	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4477677	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4577056	1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57270586	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58956090	1.00[EUR][1000 genomes]
rs59230801	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59997416	0.94[EUR][1000 genomes]
rs60003667	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60399672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61185650	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61234123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61258861	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61278540	0.94[EUR][1000 genomes]
rs61329003	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61501839	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493103	0.82[EUR][1000 genomes]
rs7162671	0.93[JPT][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs7162802	0.94[EUR][1000 genomes]
rs7163287	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7163529	0.94[EUR][1000 genomes]
rs7164709	1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[EUR][1000 genomes]
rs7166278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7167752	0.94[EUR][1000 genomes]
rs7167870	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7169333	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7170248	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7172106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7175200	0.94[EUR][1000 genomes]
rs7178318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7179390	1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[YRI][hapmap];0.82[ASN][1000 genomes]
rs7179894	0.94[EUR][1000 genomes]
rs7181772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7183109	0.89[EUR][1000 genomes]
rs73417597	0.82[ASN][1000 genomes]
rs8023453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8024623	0.94[EUR][1000 genomes]
rs8024805	0.94[EUR][1000 genomes]
rs8025727	0.94[EUR][1000 genomes]
rs8025876	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8025955	0.94[EUR][1000 genomes]
rs8026945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8027036	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8028509	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028907	0.82[EUR][1000 genomes]
rs8032079	0.94[EUR][1000 genomes]
rs8037395	0.82[EUR][1000 genomes]
rs883943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9672237	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9673085	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9806511	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs9806725	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44721000-44828000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:44750200-44828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:44783600-44828000	Weak transcription	HSMMtube	muscle
4	chr15:44796200-44828000	Weak transcription	Brain Substantia Nigra	brain
5	chr15:44797000-44828000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:44798800-44828000	Weak transcription	A549	lung
7	chr15:44800800-44828000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:44807400-44828200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:44815800-44828000	Weak transcription	Fetal Kidney	kidney
10	chr15:44816600-44828000	Weak transcription	Brain Angular Gyrus	brain
11	chr15:44816600-44828000	Weak transcription	Thymus	Thymus
12	chr15:44817600-44828000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:44817600-44828200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:44819800-44828000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:44824800-44828000	Weak transcription	Fetal Thymus	thymus
16	chr15:44826800-44828000	Enhancers	Stomach Mucosa	stomach
17	chr15:44827000-44828000	Enhancers	Fetal Heart	heart
18	chr15:44827200-44828000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr15:44827200-44828000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:44827200-44828000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr15:44827200-44828000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr15:44827200-44828000	Enhancers	K562	blood
23	chr15:44827200-44828200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr15:44827200-44828200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr15:44827400-44828000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr15:44827400-44828000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:44827400-44828000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr15:44827400-44828000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr15:44827400-44828000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:44827400-44828000	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr15:44827400-44828000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:44827400-44828000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:44827400-44828000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr15:44827400-44828000	Enhancers	Adipose Nuclei	Adipose
35	chr15:44827400-44828000	Enhancers	Fetal Muscle Trunk	muscle
36	chr15:44827400-44828000	Enhancers	Left Ventricle	heart
37	chr15:44827400-44828000	Enhancers	Pancreas	Pancrea
38	chr15:44827400-44828000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr15:44827400-44828200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr15:44827400-44828400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:44827400-44828600	Flanking Active TSS	Hela-S3	cervix
42	chr15:44827600-44828000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:44827600-44828000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:44827600-44828000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:44827600-44828000	Enhancers	Primary B cells from cord blood	blood
46	chr15:44827600-44828000	Enhancers	Primary B cells from peripheral blood	blood
47	chr15:44827600-44828000	Active TSS	Primary T cells from cord blood	blood
48	chr15:44827600-44828000	Enhancers	Primary hematopoietic stem cells	blood
49	chr15:44827600-44828000	Enhancers	Brain Hippocampus Middle	brain
50	chr15:44827600-44828000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links