Variant report

Variant	rs12594910
Chromosome Location	chr15:44882035-44882036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44880354..44882079-chr15:44883244..44885898,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10467977	0.81[ASN][1000 genomes]
rs12324194	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324710	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12591508	0.86[EUR][1000 genomes]
rs12591898	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12594463	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12594905	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2288342	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2412883	0.82[ASN][1000 genomes]
rs2412909	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2433350	0.80[ASN][1000 genomes]
rs2556561	0.84[AMR][1000 genomes]
rs2556562	0.80[ASN][1000 genomes]
rs28561508	0.83[ASN][1000 genomes]
rs3784567	0.80[ASN][1000 genomes]
rs3986142	0.82[ASN][1000 genomes]
rs3986143	0.82[ASN][1000 genomes]
rs4283209	0.84[AMR][1000 genomes]
rs58491010	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59891213	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60238894	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60399672	0.82[ASN][1000 genomes]
rs61234123	0.82[ASN][1000 genomes]
rs61258861	0.82[ASN][1000 genomes]
rs7163287	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7165017	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7166278	0.82[ASN][1000 genomes]
rs7166945	0.82[ASN][1000 genomes]
rs7178318	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7179390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417597	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027036	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs883943	0.82[ASN][1000 genomes]
rs9806511	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44858000-44900200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:44858400-44897200	Strong transcription	Fetal Stomach	stomach
4	chr15:44859000-44887800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:44859800-44887600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:44861600-44882200	Weak transcription	Psoas Muscle	Psoas
7	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:44867600-44900000	Weak transcription	Fetal Heart	heart
9	chr15:44869800-44887400	Strong transcription	Fetal Lung	lung
10	chr15:44870000-44928800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:44871400-44890200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:44871400-44907600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:44871400-44932200	Strong transcription	Fetal Muscle Trunk	muscle
15	chr15:44871600-44882400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:44871600-44894000	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr15:44871600-44903200	Strong transcription	Adipose Nuclei	Adipose
18	chr15:44871600-44917800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr15:44871800-44882800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:44871800-44884600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:44871800-44885600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:44871800-44892800	Strong transcription	Osteobl	bone
23	chr15:44871800-44893200	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr15:44871800-44924400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:44871800-44925000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:44872000-44885400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr15:44872000-44885400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:44872000-44886000	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:44872000-44890200	Strong transcription	NH-A	brain
30	chr15:44872000-44891200	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:44872000-44891400	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:44872000-44891600	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:44872000-44903600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:44872000-44935600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:44872200-44887600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:44872200-44888000	Strong transcription	GM12878-XiMat	blood
37	chr15:44872200-44923200	Strong transcription	Fetal Intestine Large	intestine
38	chr15:44872400-44883400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:44872400-44890200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:44872400-44891200	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr15:44872400-44934400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:44873000-44890600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:44873000-44913400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:44873400-44885400	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr15:44873400-44887800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:44873400-44891400	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:44873800-44885400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr15:44873800-44891000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:44873800-44897600	Strong transcription	Fetal Muscle Leg	muscle
50	chr15:44873800-44901400	Strong transcription	Placenta	Placenta

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