Variant report

Variant	rs7165017
Chromosome Location	chr15:44957573-44957574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:44956051..44957659-chr15:45067545..45070010,2	K562	blood:
2	chr15:44953988..44959855-chr15:44961562..44971881,15	K562	blood:
3	chr15:44955888..44958795-chr15:45009169..45012963,6	K562	blood:
4	chr15:44954922..44957879-chr15:44959303..44961251,3	K562	blood:
5	chr15:44952988..44962373-chr15:45002018..45007307,26	MCF-7	breast:
6	chr15:44951575..44958275-chr15:45001046..45006983,19	MCF-7	breast:
7	chr15:44950368..44953076-chr15:44957071..44958669,2	MCF-7	breast:
8	chr15:44953895..44957741-chr15:45015371..45022655,19	K562	blood:
9	chr15:44953583..44958025-chr15:45017998..45023674,11	MCF-7	breast:
10	chr15:44955959..44959684-chr15:44967579..44969667,3	K562	blood:
11	chr15:44952188..44965604-chr15:45001074..45012963,51	K562	blood:

No data

Variant related genes	Relation type
ENSG00000229474	Chromatin interaction
ENSG00000166710	Chromatin interaction
ENSG00000185880	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12324194	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12324710	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591508	0.86[EUR][1000 genomes]
rs12591898	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12594463	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12594905	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12594910	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2288342	0.82[ASN][1000 genomes]
rs2412909	0.80[ASN][1000 genomes]
rs57451506	0.84[AMR][1000 genomes]
rs58491010	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59891213	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60238894	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7163287	0.86[EUR][1000 genomes]
rs7179390	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73417597	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8027036	0.80[ASN][1000 genomes]
rs9806511	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44955800-44959200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:44955800-44959400	Weak transcription	Small Intestine	intestine
3	chr15:44956000-44959600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr15:44956200-44958600	Enhancers	Primary B cells from peripheral blood	blood
5	chr15:44956200-44962800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:44956200-44968800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:44956400-44957600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:44956400-44958000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:44956400-44958400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr15:44956400-44958400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:44956400-44958600	Enhancers	Primary B cells from cord blood	blood
12	chr15:44956400-44958800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:44956400-44959200	Weak transcription	Right Ventricle	heart
14	chr15:44956400-44962200	Weak transcription	Placenta	Placenta
15	chr15:44956600-44959200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:44956600-44960600	Weak transcription	Spleen	Spleen
17	chr15:44956800-44958400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr15:44956800-44958400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:44956800-44958400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr15:44956800-44958400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr15:44956800-44958400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr15:44956800-44958600	Weak transcription	HepG2	liver
23	chr15:44956800-44959000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:44957000-44958200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:44957000-44958400	Weak transcription	K562	blood
26	chr15:44957200-44957600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr15:44957200-44958000	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr15:44957200-44958200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr15:44957200-44958200	Enhancers	GM12878-XiMat	blood
30	chr15:44957200-44958400	Enhancers	Primary T cells from cord blood	blood
31	chr15:44957200-44958400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr15:44957200-44958400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:44957200-44958400	Weak transcription	Fetal Thymus	thymus
34	chr15:44957200-44958600	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr15:44957400-44958000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:44957400-44958000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr15:44957400-44958000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:44957400-44958200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:44957400-44958400	Weak transcription	Thymus	Thymus
40	chr15:44957400-44958600	Enhancers	Primary T cells fromperipheralblood	blood
41	chr15:44957400-44961000	Weak transcription	Dnd41	blood

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